diff test-data/rgClustal_testout03.aln @ 4:d9c2b2fde6a3 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit fdbbc72ea8880e53b09ca3e60bafa544d5088dbc
author devteam
date Thu, 15 Sep 2022 12:12:51 +0000
parents
children
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rgClustal_testout03.aln	Thu Sep 15 12:12:51 2022 +0000
@@ -0,0 +1,458 @@
+CLUSTAL 2.1 multiple sequence alignment
+
+
+14==            ------------------------------------MESGNV-SSSLFGNVSTA-LRPEA
+15==            ------------------------------------MEYHNV-SSVL-GNVSSV-LRPDA
+16==            ------------------------------------ME-------PL-CNASEPPLRPEA
+17==            ------------------------------------MD-------AL-CNASEPPLRPEA
+18==            -----------------------------------------------MTNATG----PQM
+19==            -----------------------------------------------MANVTG----PQM
+20==            ------------------------------------ME-SFA----VAAAQLG----PH-
+21==            ------------------------------------ME-SFA----VAAAQLG----PH-
+22==            ------------------------------------MD-SFA----AVATQLG----PQ-
+23==            ------------------------------------MERSHLPETPFDLAHSG----PR-
+24==            ------------------------------------MERSLLPEPPLAMALLG----PR-
+25==            -----------------------------------------------MIAVSG----PS-
+26==            ------------------------------------------MANQLSYSSLGW---P--
+27==            ------------------------------------------------------------
+28==            ------------------------------------------------------------
+1==             -----------------------------------------------------MNGT-E-
+2==             -----------------------------------------------------MNGT-E-
+4=p             -----------------------------------------------------MNGT-E-
+5=p             -----------------------------------------------------MNGT-E-
+3==             -----------------------------------------------------MNGT-E-
+6==             -----------------------------------------------------MKQVPEF
+7==             -----------------------------------------------------MRKMSE-
+9==             -----------------------------------------MAQQWSLQRLAGRHPQDSY
+10==            -----------------------------------------MAQQWSLQRLAGRHPQDSY
+8=opsin_        ------------------------------------------------------------
+11==            -----------------------------------------MTEAWNVAVFAARRSRDD-
+12==            -----------------------------------------MA-AWEAA-FAARRRHEE-
+13==            ------------------------------------------------------------
+30==            ------------------------------------------------------------
+31=p            ------------------------------------------------------------
+29==            ---------------------MMDVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDGGADP
+32==            -----------------------------------------------MDVL-SPGQ-GNN
+33=p            -----------------------------------------------MDVF-SFGQ-GNN
+34==            MANFTFGDLALDVARM-GGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFING
+35=p            MANFTFGDLALDVARM-GGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFING
+36==            ---------------MEGAEGQEELDWEALYLRLP-LQ---------NCSWNSTGWEPNW
+                                                                            
+
+14==            RLSA---ETRLLGWN------VPPEELRH-IPEHWLTYPE-PPES--MNYLLGT---LYI
+15==            RLSA---ESRLLGWN------VPPDELRH-IPEHWLIYPE-PPES--MNYLLGT---LYI
+16==            R-SSGNGDLQFLGWN------VPPDQIQY-IPEHWLTQLE-PPAS--MHYMLGV---FYI
+17==            RMSSGSDELQFLGWN------VPPDQIQY-IPEHWLTQLE-PPAS--MHYMLGV---FYI
+18==            AYYGAASMDFGYPEGVSIVDFVRPE-IKPYVHQHWYNY---PPVNPMWHYLLGV---IYL
+19==            AFYGSGAATFGYPEGMTVADFV-PDRVKHMVLDHWYNY---PPVNPMWHYLLGV---VYL
+20==            -F-A-PL------SNGSVVDKVTPD-MAHLISPYWNQF---PAMDPIWAKILTA---YMI
+21==            -F-A-PL------SNGSVVDKVTPD-MAHLISPYWNQF---PAMDPIWAKILTA---YMI
+22==            -F-AAP-------SNGSVVDKVTPD-MAHLISPYWDQF---PAMDPIWAKILTA---YMI
+23==            -FQAQSS------GNGSVLDNVLPD-MAHLVNPYWSRFA--P-MDPMMSKILGL---FTL
+24==            -FEAQTG------GNRSVLDNVLPD-MAPLVNPHWSRFA--P-MDPTMSKILGL---FTL
+25==            -YEAFSYGGQARFNNQTVVDKVPPD-MLHLIDANWYQY---PPLNPMWHGILG----FVI
+26==            -Y--QP--------NASVVDTMPKE-MLYMIHEHWYAF---PPMNPLWYSILGV---AMI
+27==            -----MVESTTLV-NQTW--WYNPTVDIH---PHWAKFDPIP--DAVYYS-VG----IFI
+28==            -----M--GRDLRDNETW--WYNPSIVVH---PHWREFDQVP--DAVYYS-LG----IFI
+1==             GDNFYV-PF----SNKTGLARSPYE------YPQY-YLA------EPWKYSALA---AYM
+2==             GPNFYV-PF----SNITGVVRSPFE------QPQY-YLA------EPWQFSMLA---AYM
+4=p             GKNFYV-PM----SNRTGLVRSPFE------YPQY-YLA------EPWQFKILA---LYL
+5=p             GNNFYV-PL----SNRTGLVRSPFE------YPQY-YLA------EPWQFKLLA---VYM
+3==             GINFYV-PM----SNKTGVVRSPFE------YPQY-YLA------EPWKYRLVC---CYI
+6==             HEDFYI-PIPLDINNLSAY--SPFL------VPQD-HLG------NQGIFMAMS---VFM
+7==             -EEFYLF------KNISSV--GPWD------GPQY-HIA------PVWAFYLQA---AFM
+9==             EDSTQSSIFTYTNSNST---RGPFE------GPNY-HIA------PRWVYHLTS---VWM
+10==            EDSTQSSIFTYTNSNST---RGPFE------GPNY-HIA------PRWVYHLTS---VWM
+8=opsin_        ------------------------------------------------------------
+11==            DDTTRGSVFTYTNTNNT---RGPFE------GPNY-HIA------PRWVYNLVS---FFM
+12==            EDTTRDSVFTYTNSNNT---RGPFE------GPNY-HIA------PRWVYNLTS---VWM
+13==            ----MSSNSSQAPPNGT---PGPFD------GPQWPYQA------PQSTYVGVA---VLM
+30==            -----MPHLLSGFLEVTASPAPT----WDAPPDNVSGCGEQINYGRVEKVVIGS----IL
+31=p            -----MPHLLSGFLEVTASPAPT----WDAPPDNVSGCGEQINYGRVEKVVIGS----IL
+29==            VAGSWAPHLLS---EVTASPAPT----WDAPPDNASGCGEQINYGRVEKVVIGS----IL
+32==            TTSPPAPFETGG--NTTGISDVTVS-YQ----------------------VITS---LLL
+33=p            TTASQEPFGTGG--NVTSISDVTFS-YQ----------------------VITS---LLL
+34==            SHSSRSRDNASA--NDTSATNMTDDRYW------------SLTVYSHEHLVLTS---VIL
+35=p            SHSSRSRDNASA--NDTSATNMTDDRYW------------SLTVYSHEHLVLTS---VIL
+36==            --------------NVTVVPNTT---WWQA----------SAPFDTPAALVRAAAKAVVL
+                                                                            
+
+14==            -FFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDF-MMMVK-TPIFIYNSFHQGY
+15==            -FFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDF-MMMIK-TPIFIYNSFHQGY
+16==            -FLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL-IMCLK-APIF--NSFHRGF
+17==            -FLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL-IMCLK-APIFIYNSFHRGF
+18==            -FLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGG-
+19==            -FLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGG-
+20==            -MIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYFE--
+21==            -MIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYFE--
+22==            -IIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYFE--
+23==            -AIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYYE--
+24==            -VILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYYE--
+25==            GMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYYE--
+26==            -ILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFAE--
+27==            GVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFMK--
+28==            GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK--
+1==             FFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMNGY-
+2==             FLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLHGY-
+4=p             FFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAINGY-
+5=p             FFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAINGY-
+3==             FFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWNGY-
+6==             FFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFNRY-
+7==             GTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPV-FVASCNGY-
+9==             IFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVYGY-
+10==            IFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVSGY-
+8=opsin_        --------------------------------------DLAETVIA-STISIVNQVSGY-
+11==            IIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIFGY-
+12==            IFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQISGY-
+13==            GTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNINGF-
+30==            TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGG-
+31=p            TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGG-
+29==            TLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGG-
+32==            GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVLN--
+33=p            GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVLN--
+34==            GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEISK--
+35=p            GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEISK--
+36==            GLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVVQ--
+                                                      .         .           
+
+14==            A--LGHLGCQIFGIIGSYTGIAAGA-TNAFIAYDRFNVITRPMEG-K-MTHGKAIAMIIF
+15==            A--LGHLGCQIFGVIGSYTGIAAGA-TNAFIAYDRYNVITRPMEG-K-MTHGKAIAMIIF
+16==            AIYLGNTWCQIFASIGSYSGIGAGM-TNAAIGYDRYNVITKPMNR-N-MTFTKAVIMNII
+17==            A--LGNTWCQIFASIGSYSGIGAGM-TNAAIGYDRYNVITKPMNR-N-MTFTKAVIMNII
+18==            VWMFSPQYCEIYACLGAITGVC-SIWLLCMISFDRYNIICNGFNG-PKLTTGKAVVFALI
+19==            RWMFSGTYCEIYAALGAITGVC-SIWTLCMISFDRYNIICNGFNG-PKLTQGKATFMCGL
+20==            TWVLGPMMCDIYAGLGSAFG-CSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKM--
+21==            TWVLGPMMCDIYAGLGSAFG-CSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY
+22==            TWVLGPMMCDIYAGLGSAFG-CSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY
+23==            TWVLGPLWCDIYAGCGSLFG-CVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKILF
+24==            TWVLGPLWCDIYAACGSLFG-CVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKIAF
+25==            TWVLGPLFCQIYAMLGSLFG-CGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALIRIIA
+26==            TWILGPFMCEVYGMAGSLFG-CASIWSMVMITLDRYNVIVRGMAA-APLTHKKATLLLLF
+27==            KWIFGKVACQLYGLLGGIFG-FMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIF
+28==            KWIFGFAACKVYGFIGGIFG-FMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIF
+1==             -FVFGPTMCSIEGFFATLGG-EVALWSLVVLAIERYIVICKPM-GNFRFGNTHAIMGVAF
+2==             -FVFGPTGCNLEGFFATLGG-EIGLWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAF
+4=p             -FVLGPTGCAVEGFMATLGG-EVALWSLVVLAIERYIVVCKPM-GSFKFSSSHAFAGIAF
+5=p             -FALGPTGCAVEGFMATLGG-EVALWSLVVLAIERYIVVCKPM-GSFKFSSTHASAGIAF
+3==             -FVFGPVGCAVEGFFATLGG-QVALWSLVVLAIERYIVVCKPM-GNFRFSATHAMMGIAF
+6==             -FIFGATACKIEGFLATLGG-MVGLWSLAVVAFERWLVICKPL-GNFTFKTPHAIAGCIL
+7==             -FVFGRHVCALEGFLGTVAG-LVTGWSLAFLAFERYIVICKPF-GNFRFSSKHALTVVLA
+9==             -FVLGHPMCVLEGYTVSLCG-ITGLWSLAIISWERWMVVCKPF-GNVRFDAKLAIVGIAF
+10==            -FVLGHPMCVLEGYTVSLCG-ITGLWSLAIISWERWLVVCKPF-GNVRFDAKLAIVGIAF
+8=opsin_        -FVLGHPMCVLEGYTVSLCG-ITGLWSLAIISWERWLVVCKPF-GNVRFDAKLAIVGIAF
+11==            -FILGHPLCVIEGYVVSSCG-ITGLWSLAIISWERWFVVCKPF-GNIKFDSKLAIIGIVF
+12==            -FILGHPMCVVEGYTVSACG-ITALWSLAIISWERWFVVCKPF-GNIKFDGKLAVAGILF
+13==            -FVFGRRMCELEGFMVSLTG-IVGLWSLAILALERYVVVCKPL-GDFQFQRRHAVSGCAF
+30==            KWIFGHFFCNVFIAMDVMCC-TASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS
+31=p            KWIFGHFFCNVFIAMDVMCC-TASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS
+29==            KWIFGHFFCNVFIAMDVMCC-TASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS
+32==            KWTLGQVTCDLFIALDVLCC-TSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL
+33=p            KWTLGQVTCDLFIALDVLCC-TSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL
+34==            VWFLHSEVCDMWISVDVLCC-TASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV
+35=p            VWFLHSEVCDMWISVDVLCC-TASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV
+36==            RWTLGPELCDMWTSGDVLCC-TASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIAC
+                   :    * :                   :  :*:  :   :                 
+
+14==            IYMYATPWV-VACYTETW------GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFS
+15==            IYLYATPWV-VACYTESW------GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFS
+16==            IWLYCTPWV-VLPLTQFW------DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFFFS
+17==            IWLYCTPWV-VLPLTQFW------DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFLFS
+18==            SWVIAIGCA-LPPFF-GW------GNYILEGILDSCSYDYLT--QDFNTFSYNIFIFVFD
+19==            AWVISVGWS-LPPFF-GW------GSYTLEGILDSCSYDYFT--RDMNTITYNICIFIFD
+20==            --------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFV
+21==            IWFMSSIWC-LAPAF-GW------SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFV
+22==            IWFMSTIWCCLAPVF-GW------SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFV
+23==            IWMMAVFWT-VMPLI-GW------SAYVPEGNLTACSIDYMT--RMWNPRSYLITYSLFV
+24==            IWMMAVFWT-IMPLI-GW------SSYVPEGNLTACSIDYMT--RQWNPRSYLITYSLFV
+25==            IWLFSLGWT-IAPMF-GW------NRYVPEGNMTACGTDYFN--RGLLSASYLVCYGIWV
+26==            VWIWSGGWT-ILPFF-GW------SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYGLAV
+27==            VWMWSIVWS-VGPVF-NW------GAYVPEGILTSCSFDYLS--TDPSTRSFILCMYFCG
+28==            VWLWSVLWA-IGPIF-GW------GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMFILG
+1==             TWIMALACA-APPLV-GW------SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVH
+2==             TWVMALACA-APPLV-GW------SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVH
+4=p             TWVMALACA-APPLF-GW------SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCH
+5=p             TWVMAMACA-APPLV-GW------SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICH
+3==             TWVMAFSCA-APPLF-GW------SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIH
+6==             PWISALAAS-LPPLF-GW------SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFC
+7==             TWTIGIGVS-IPPFF-GW------SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC
+9==             SWIWAAVWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTC
+10==            SWIWSAVWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTC
+8=opsin_        SWIWAAVWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTC
+11==            SWVWAWGWS-APPIF-GW------SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITC
+12==            SWLWSCAWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTC
+13==            TWGWALLWS-APPLL-GW------SSYVPEGLRTSCGPNWYTGGS--NNNSYILSLFVTC
+30==            VWLLSASIT-LPPLF-GW-----AQNVNDDKV---CLIS--------QDFGYTIYSTAVA
+31=p            VWLLSASIT-LPPLF-GW-----AQNVNDDKV---CLIS--------QDFGYTIYSTAVA
+29==            VWLLSASIT-LPPLF-GW-----AQNVNDDKV---CLIS--------QDFGYTIYSTAVA
+32==            TWLIGFLIS-IPPML-GWRTPE--DRSDPDA----CTIS--------KDHGYTIYSTFGA
+33=p            TWLIGFLIS-IPPML-GWRTPE--DRSDPDA----CTIS--------KDHGYTIYSTFGA
+34==            VWIVALFIS-IPPLF-GWRDPN-N---DPDKTG-TCIIS--------QDKGYTIFSTVGA
+35=p            VWIVALFIS-IPPLF-GWRDPN-N---DPDKTG-TCIIS--------QDKGYTIFSTVGA
+36==            VWTVSFFVC-IAQLL-GWKDPDWNQRVSEDL---RCVVS--------QDVGYQIFATASS
+                                             .     *  .                     
+
+14==            FVCPTTMITYYYSQIVGHVFSHEKAL----------------------------------
+15==            FVCPTTMITYYYSQIVGHVFSHEKAL----------------------------------
+16==            FVCPTLMILYYYSQIVGHVFSHEKAL----------------------------------
+17==            FVVPTLMILYYYSQIVGHVFNHEKAL----------------------------------
+18==            YFLPAAIIVFSYVFIVKAIFAHEAAM----------------------------------
+19==            FFLPASVIVFSYVFIVKAIFAHEAAM----------------------------------
+20==            YYIPLFLICYSYWFIIAAVSAHEKAM----------------------------------
+21==            YYIPLFLICYSYWFIIAAVSAHEKAM----------------------------------
+22==            YYIPLFLICYSYWFIIAAVSAHEKAM----------------------------------
+23==            YYTPLFLICYSYWFIIAAVAAHEKAM----------------------------------
+24==            YYTPLFMICYSYWFIIATVAAHEKAM----------------------------------
+25==            YFVPLFLIIYSYWFIIQAVAAHEKNM----------------------------------
+26==            YFLPLITMIYCYFFIVHAVAEHEKQL----------------------------------
+27==            FMLPIIIIAFCYFNIVMSVSNHEKEM----------------------------------
+28==            FFGPILIIFFCYFNIVMSVSNHEKEM----------------------------------
+1==             FLVPFVIIFFCYGRLLCTV-----------------------------------------
+2==             FTIPMIVIFFCYGQLVFTV-----------------------------------------
+4=p             FILPVAVIFFTYGRLVCTV-----------------------------------------
+5=p             FILPVTIIFFTYGRLVCTV-----------------------------------------
+3==             FIIPVVVIFFSYGRLICKV-----------------------------------------
+6==             FAVPFGTIVFCYGQLLITL-----------------------------------------
+7==             FIVPLSLICFSYTQLLRAL-----------------------------------------
+9==             CITPLSIIVLCYLQVWLAI-----------------------------------------
+10==            CIIPLAIIMLCYLQVWLAI-----------------------------------------
+8=opsin_        CITPLSIIVLCYLQVWLAI-----------------------------------------
+11==            CFLPLFIIIVCYLQVWMAI-----------------------------------------
+12==            CFFPLAIIILCYLQVWLAI-----------------------------------------
+13==            FVLPLSLILFSYTNLLLTL-----------------------------------------
+30==            FYIPMSVMLFMYYQIYKAARKSAAK--HKF-------------------P----------
+31=p            FYIPMSVMLFMYYQIYKAARKSAAK--HKF-------------------P----------
+29==            FYIPMSVMLFMYYQIYKAARKSAAK--HKF-------------------P----------
+32==            FYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASP----APQPKKS----VN
+33=p            FYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSS----APPPKKS----LN
+34==            FYLPMLVMMIIYIRIWLVARSRIRK--DKFQ--MTKARLKTEETTLVASPKTEY--SVVS
+35=p            FYLPMLVMMIIYIRIWLVARSRIRK--DKFQ--MTKARLKTEETTLVASPKTEY--SVVS
+36==            FYVPVLIILILYWRIYQTARKRIRR--RR----GATARGG------VGPPPVPAGGALVA
+                   *   :   *  :                                             
+
+14==            ----------------------------RDQAKKM----------------NVES-----
+15==            ----------------------------RDQAKKM----------------NVDS-----
+16==            ----------------------------REQAKKM----------------NVES-----
+17==            ----------------------------REQAKKM----------------NVES-----
+18==            ----------------------------RAQAKKM----------------NVST-----
+19==            ----------------------------RAQAKKM----------------NVTN-----
+20==            ----------------------------REQAKKM----------------NVKS-----
+21==            ----------------------------REQAKKM----------------NVKS-----
+22==            ----------------------------REQAKKM----------------NVKS-----
+23==            ----------------------------REQAKKM----------------NVKS-----
+24==            ----------------------------RDQAKKM----------------NVKS-----
+25==            ----------------------------REQAKKM----------------NVAS-----
+26==            ----------------------------REQAKKM----------------NVAS-----
+27==            ----------------------------AAMAKRL----------------NAKE-----
+28==            ----------------------------AAMAKRL----------------NAKE-----
+1==             ----------------------------KEAAAA--------------------------
+2==             ----------------------------KEAAAQ--------------------------
+4=p             ----------------------------KAAAAQ--------------------------
+5=p             ----------------------------KAAAAQ--------------------------
+3==             ----------------------------REAAAQ--------------------------
+6==             ----------------------------KLAAKA--------------------------
+7==             ----------------------------KAVAAQ--------------------------
+9==             ----------------------------RAVAKQ--------------------------
+10==            ----------------------------RAVAKQ--------------------------
+8=opsin_        ----------------------------RAVAKQ--------------------------
+11==            ----------------------------RAVAAQ--------------------------
+12==            ----------------------------RAVAAQ--------------------------
+13==            ----------------------------RAAAAQ--------------------------
+30==            ------------------------G-FPRVQ---------PESVISLNGVVKLQK-----
+31=p            ------------------------G-FPRVQ---------PESVISLNGVVKLQK-----
+29==            ------------------------G-FPRVE---------PDSVIALNGIVKLQK-----
+32==            GESGSRNWRLGVESKAGGALCAN-G-AVRQGDDGAALEVIE-----VHRVGNSKEHLPL-
+33=p            GQPGSGDWRRCAENRAVGTPCTN-G-AVRQGDDEATLEVIE-----VHRVGNSKEHLPL-
+34==            DCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQI
+35=p            DCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQI
+36==            ---GGGSGGIAA------AVVAVIG---RP---------LP----------TISE-----
+                                                                            
+
+14==            ---------------------LRSNV-DKNKE----------------------------
+15==            ---------------------LRSNV-DKSKE----------------------------
+16==            ---------------------LRSNV-DKSKE----------------------------
+17==            ---------------------LRSNV-DKSKE----------------------------
+18==            ---------------------LRSNEADAQR-----------------------------
+19==            ---------------------LRSNEAETQR-----------------------------
+20==            ---------------------LRSSE-DAEK-----------------------------
+21==            ---------------------LRSSE-DAEK-----------------------------
+22==            ---------------------LRSSE-DADK-----------------------------
+23==            ---------------------LRSSE-DCDK-----------------------------
+24==            ---------------------LRSSE-DCDK-----------------------------
+25==            ---------------------LRSSE-NQNT-----------------------------
+26==            ---------------------LRANA-DQQKQ----------------------------
+27==            ---------------------LRKAQ---AGA----------------------------
+28==            ---------------------LRKAQ---AGA----------------------------
+1==             ----------------------QQESASTQK-----------------------------
+2==             ----------------------QQESATTQK-----------------------------
+4=p             ----------------------QQDSASTQK-----------------------------
+5=p             ----------------------QQDSASTQK-----------------------------
+3==             ----------------------QQESATTQK-----------------------------
+6==             ----------------------QADSASTQK-----------------------------
+7==             ----------------------QQESATTQK-----------------------------
+9==             ----------------------QKESESTQK-----------------------------
+10==            ----------------------QKESESTQK-----------------------------
+8=opsin_        ----------------------QKESESTQK-----------------------------
+11==            ----------------------QKESESTQK-----------------------------
+12==            ----------------------QKESESTQK-----------------------------
+13==            ----------------------QKEADTTQR-----------------------------
+30==            ---------------------EVEECAN------------------------LSRLLKHE
+31=p            ---------------------EVEECAN------------------------LSRLLKHE
+29==            ---------------------EVEECAN------------------------LSRLLKHE
+32==            ---PSEAGPTPCA----PASFERKNERNAEA----------------------KR-----
+33=p            ---PSESGSNSYA----PACLERKNERNAEA----------------------KR-----
+34==            QIETAEAFANGCAEEASIAMLERQ-CNNGKKISSNDTP---Y---------SRTR----E
+35=p            QIETAEAFANGCAEEASIAMLERQ-CNNGKKISSNDTP---Y---------SRTR----E
+36==            --TTTTGFTNVSSNNTSP---EKQSCANGLE---ADPPTTGYGAVAAAYYPSLVRRKPKE
+                                                                            
+
+14==            -------TAEIRIAKAAITICFLFFCSWTPYGVM-SLIGAF----GDKTLLTPGATMIPA
+15==            -------AAEIRIAKAAITICFLFFASWTPYGVM-SLIGAF----GDKTLLTPGATMIPA
+16==            -------TAEIRIAKAAITICFLFFVSWTPYGVM-SLIGAF----GDKSLLTQGATMIPA
+17==            -------TAEIRIAKAAITICFLFFVSWTPYGVM-SLIGAF----GDKSLLTPGATMIPA
+18==            --------AEIRIAKTALVNVSLWFICWTPYALI-SLKGVMGDTSG----ITPLVSTLPA
+19==            --------AEIRIAKTALVNVSLWFICWTPYAAI-TIQGLLGNAEG----ITPLLTTLPA
+20==            -------SAEGKLAKVALVTITLWFMAWTPYLVINCM-GLF-KFEG----LTPLNTIWGA
+21==            -------SAEGKLAKVALVTITLWFMAWTPYLVINCM-GLF-KFEG----LTPLNTIWGA
+22==            -------SAEGKLAKVALVTISLWFMAWTPYLVINCM-GLF-KFEG----LTPLNTIWGA
+23==            -------SAEGKLAKVALTTISLWFMAWTPYLVI-CYFGLF-KIDG----LTPLTTIWGA
+24==            -------SAENKLAKVALTTISLWFMAWTPYLII-CYFGLF-KIDG----LTPLTTIWGA
+25==            -------SAECKLAKVALMTISLWFMAWTPYLVI-NFSGIF-NLVK----ISPLFTIWGS
+26==            -------SAECRLAKVAMMTVGLWFMAWTPYLII-SWAGVF-S-SGTR--LTPLATIWGS
+27==            -------SAEMKLAKISMVIITQFMLSWSPYAII-ALLAQF----GPAEWVTPYAAELPV
+28==            -------NAEMRLAKISIVIVSQFLLSWSPYAVV-ALLAQF----GPLEWVTPYAAQLPV
+1==             --------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFTH---QGSD--FGATFMTLPA
+2==             --------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFTH---QGSN--FGPIFMTLPA
+4=p             --------AEREVTKMVILMVFGFLIAWTPYATVAAWIFFN---KGAD--FSAKFMAIPA
+5=p             --------AEREVTKMVILMVLGFLVAWTPYATVAAWIFFN---KGAA--FSAQFMAIPA
+3==             --------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFTN---KGAD--FTATLMAVPA
+6==             --------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVSH---RGEE--FDLRMATIPS
+7==             --------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNN---RNHG--LDLRLVTIPS
+9==             --------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAAN---PGYP--FHPLMAALPA
+10==            --------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAAN---PGYA--FHPLMAALPA
+8=opsin_        --------AEKEVTRMVVVMVLAFC-----------------------------------
+11==            --------AEREVSRMVVVMIVAFCICWGPYASFVSFAAAN---PGYA--FHPLAAALPA
+12==            --------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAAN---PGYA--FHPLAAALPA
+13==            --------AEREVTRMVIVMVMAFLLCWLPYSTFALVVATH---KGII--IQPVLASLPS
+30==            RKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFI--CGTSCSCIPLWVERTCL
+31=p            RKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFI--CGTSCSCIPLWVERTCL
+29==            RKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFI--CGTSCSCIPLWVERTFL
+32==            KMAL---ARERKTVKTLGIIMGTFILCWLPFFIVALVLPF---CESSCH-MPTLLGAIIN
+33=p            KMAL---ARERKTVKTLGIIMGTFILCWLPFFIVALVLPF---CESSCH-MPALLGAIIN
+34==            KLEL---KRERKAARTLAIITGAFLICWLPFFIIALIGPF---VD--PEGIPPFARSFVL
+35=p            KLEL---KRERKAARTLAIITGAFLICWLPFFIIALIGPF---VD--PEGIPPFARSFVL
+36==            AADS---KRERKAAKTLAIITGAFVACWLPFFVLAILVPT---CD--CE-VSPVLTSLSL
+                         * .           :                                    
+
+14==            CACKMVACIDPFVYAISHPRYRMELQKRCP--WLALNE--KAPESSAVASTSTTQEP-QQ
+15==            CTCKMVACIDPFVYAISHPRYRMELQKRCP--WLAISE--KAPESRAAISTSTTQEQ-QQ
+16==            CTCKLVACIDPFVYAISHPRYRLELQKRCP--WLGVNE--KSGEISSAQST-TTQEQ-QQ
+17==            CTCKLVACIEPFVYAISHPRYRMELQKRCP--WLGVNE--KSGEASSAQST-TTQEQTQQ
+18==            LLAKSCSCYNPFVYAISHPKYRLAITQHLP--WFCV-H--ETETKSND----DSQSN--S
+19==            LLAKSCSCYNPFVYAISHPKFRLAITQHLP--WFCV-H--EKDP--NDV--EENQSS--N
+20==            CFAKSAACYNPIVYGISHPKYRLALKEKCP---CCVFG--KVD----DGKSSDAQSQ--A
+21==            CFAKSAACYNPIVYGISHPKYRLALKEKCP---CCVFG--KVD----DGKSSDAQSQ--A
+22==            CFAKSAACYNPIVYGISHPKYRLALKEKCP---CCVFG--KVD----DGKSSEAQSQ--A
+23==            TFAKTSAVYNPIVYGISHPKYRIVLKEKCP---MCVFG--NTDEPKPDAPASDTE-----
+24==            TFAKTSAVYNPIVYGISHPNDRLVLKEKCP---MCVCG--TTDEPKPDAPPSDTE-----
+25==            LFAKANAVYNPIVYGISHPKYRAALFAKFPS-LACA------AEPSSDA-VSTTSGT--T
+26==            VFAKANSCYNPIVYGISHPRYKAALYQRFPS-LACGSG-----ESGSDV---KSEAS--A
+27==            LFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQF--DEKE-CEDANDAEEEVVASE
+28==            MFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF--DDKE-TEDDKDAETEIPAGE
+1==             FFAKSSALYNPVIYILMNKQFRNCMITTLC----CGKNPLGDDE--SGASTSKTEVSSVS
+2==             FFAKTASIYNPIIYIMMNKQFRNCMLTSLC----CGKNPLGDDE--ASATASKTE-----
+4=p             FFSKSSALYNPVIYVLLNKQFRNCMLTTIF----CGKNPLGDDE-SSTVSTSKTEVSSVS
+5=p             FFSKTSALYNPVIYVLLNKQFRSCMLTTLF----CGKNPLGDEE-SSTVSTSKTEVSSVS
+3==             FFSKSSSLYNPIIYVLMNKQFRNCMITTIC----CGKNPFGDEDVSSTVSQSKTEVSSVS
+6==             CLSKASTVYNPVIYVLMNKQFRSCMMKMV-----CGKN-IEEDE--ASTSSQVTQVSSVA
+7==             FFSKSACIYNPIIYCFMNKQFQACIMKMV-----CGKA-MTDES--DTCSSQKTEVSTVS
+9==             FFAKSATIYNPVIYVFMNRQFRNCILQLF------G---KKVDDGSELSSASKTEVSSVS
+10==            YFAKSATIYNPVIYVFMNRQFRNCILQLF------G---KKVDDGSELSSASKTEVSSVS
+8=opsin_        ------------------------------------------------------------
+11==            YFAKSATIYNPVIYVFMNRQFRNCIMQLF------G---KKVDDGSEASTTSRTEVSSVS
+12==            YFAKSATIYNPIIYVFMNRQFRNCILQLF------G---KKVDDGSEVST-SRTEVSSVS
+13==            YFSKTATVYNPIIYVFMNKQFQSCLLEMLC----CGYQPQRTGKASPGTPGPHADVTAAG
+30==            WLGYANSLINPFIYAFFNRDLRPTSRSLLQ----CQY-RNINRKLSAAGMHEALKLAERP
+31=p            WLGYANSLINPFIYAFFNRDLRTTYRSLLQ----CQY-RNINRKLSAAGMHEALKLAERP
+29==            WLGYANSLINPFIYAFFNRDLRTTYRSLLQ----CQY-RNINRKLSAAGMHEALKLAERP
+32==            WLGYSNSLLNPVIYAYFNKDFQNAFKKIIK----CKFCRQ--------------------
+33=p            WLGYSNSLLNPVIYAYFNKDFQNAFKKIIK----CKFCRR--------------------
+34==            WLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYRRGHR-----------------
+35=p            WLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYRRGHR-----------------
+36==            WLGYFNSTLNPVIYTVFSPEFRHAFQRLL-----CG--RRVRRRRAPQ------------
+                                                                            
+
+14==            TTAA--------------------------------------------------------
+15==            TTAA--------------------------------------------------------
+16==            TTAA--------------------------------------------------------
+17==            TSAA--------------------------------------------------------
+18==            TVAQDKA-----------------------------------------------------
+19==            TQTQEKS-----------------------------------------------------
+20==            TASEAE-SKA--------------------------------------------------
+21==            TASEAE-SKA--------------------------------------------------
+22==            TTSEAE-SKA--------------------------------------------------
+23==            TTSEAD-SKA--------------------------------------------------
+24==            TTSEAE-SKD--------------------------------------------------
+25==            TVTDNEKSNA--------------------------------------------------
+26==            TTTMEEKPKIPEA-----------------------------------------------
+27==            R--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPP
+28==            SSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG-YPP-QGYPP
+1==             T-SPVSPA----------------------------------------------------
+2==             T-SQVAPA----------------------------------------------------
+4=p             ------PA----------------------------------------------------
+5=p             ------PA----------------------------------------------------
+3==             S-SQVSPA----------------------------------------------------
+6==             ------PEK---------------------------------------------------
+7==             S-TQVGPN----------------------------------------------------
+9==             ---SVSPA----------------------------------------------------
+10==            ---SVSPA----------------------------------------------------
+8=opsin_        ------------------------------------------------------------
+11==            N-SSVAPA----------------------------------------------------
+12==            N-SSVSPA----------------------------------------------------
+13==            LRNKVMPAHPV-------------------------------------------------
+30==            ERSEFVLQNSDHCGKKGHDT----------------------------------------
+31=p            ERSEFVLQNSDHCGKKGHDT----------------------------------------
+29==            ERPEFVLQNADYCRKKGHDS----------------------------------------
+32==            ------------------------------------------------------------
+33=p            ------------------------------------------------------------
+34==            ------------------------------------------------------------
+35=p            ------------------------------------------------------------
+36==            ------------------------------------------------------------
+                                                                            
+
+14==            ----------------------------------------
+15==            ----------------------------------------
+16==            ----------------------------------------
+17==            ----------------------------------------
+18==            ----------------------------------------
+19==            ----------------------------------------
+20==            ----------------------------------------
+21==            ----------------------------------------
+22==            ----------------------------------------
+23==            ----------------------------------------
+24==            ----------------------------------------
+25==            ----------------------------------------
+26==            ----------------------------------------
+27==            QGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
+28==            QGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
+1==             ----------------------------------------
+2==             ----------------------------------------
+4=p             ----------------------------------------
+5=p             ----------------------------------------
+3==             ----------------------------------------
+6==             ----------------------------------------
+7==             ----------------------------------------
+9==             ----------------------------------------
+10==            ----------------------------------------
+8=opsin_        ----------------------------------------
+11==            ----------------------------------------
+12==            ----------------------------------------
+13==            ----------------------------------------
+30==            ----------------------------------------
+31=p            ----------------------------------------
+29==            ----------------------------------------
+32==            ----------------------------------------
+33=p            ----------------------------------------
+34==            ----------------------------------------
+35=p            ----------------------------------------
+36==            ----------------------------------------
+