Mercurial > repos > devteam > clustalw
changeset 5:4daabc25df00 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clustalw commit f7923954e747d05d1e70d653ef1b544c3e14622f
| author | iuc |
|---|---|
| date | Sun, 02 Oct 2022 15:32:37 +0000 |
| parents | d9c2b2fde6a3 |
| children | 83e828f8ba26 |
| files | test-data/rgClustal_testout02.fasta test-data/rgClustal_testout03.fasta |
| diffstat | 2 files changed, 502 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rgClustal_testout02.fasta Sun Oct 02 15:32:37 2022 +0000 @@ -0,0 +1,44 @@ +CLUSTAL 2.1 multiple sequence alignment + + +c_briggsae-chrIfooI_+_/43862-4 CG-CACAAAT----ATG--ATGCACA-AATCCACAA------------CC +c_brenneri-Cbre_Contig60gak_+_ CG-CACAAAT----GTA--GTGGACA-AATCCGCAT------------CC +c_remanei-Crem_Contig172foo_-_ -AGCACAAAT----GTA--ATGAACG-AATCCGCAT------------CC +c_elegans-II_+_more/9706834-97 TG-CACAAAT----GTG--ATGAACG-AATCCACAT------------CC +c_briggsae-chrII_+_bar/43862-4 ---C-CGGA-----GT----CG------ATCC-----------------C +c_briggsae-chrII_+_/43862-4631 ----ATGAGCTTCCACA--AAA-GCATGAGCT-T-T------------CT +c_brenneri-Cbre_Contig60_+_/62 ----ATGAGCCTCCACA--ACA-GCATGATTT-T-T------------CT +c_remanei-Crem_Contig172_-_/12 ----ATGAGCCTCTACAAC-CG--CATGATTC-T-T------------TT +c_elegans-II_+_/9706834-970880 ----ATGAGCCTCTAC--TACA-GCATGATTC-T-T------------CT +c_remanei-Crem_Contig172zot_-_ ----ACGAA-----GT----CG-GT----CCC-TATAAGG---------T +c_elegans-II_+_meh/9706834-970 ----ACGAA-----GT----CG-GT----CCC-T---GAA---------C +c_brenneri-Cbre_Contig60fee_+_ ----ACGAA-----GT----CG-AT----CCC-TG--AAA---------T + + +c_briggsae-chrIfooI_+_/43862-4 -TAAAGCATCTC----CGAT---AACGTTGAC---CGAA-G-T------- +c_brenneri-Cbre_Contig60gak_+_ -CAAAGCGTCTC----CGAT---AACATTTAC---CGAA-G-T------- +c_remanei-Crem_Contig172foo_-_ -CAACGCATCGC----CAAT---CACATTCAC----AGATG-T------- +c_elegans-II_+_more/9706834-97 -CAATGCATCAC----CGAT---CACATTGAC----AGATG-T------- +c_briggsae-chrII_+_bar/43862-4 -TGA-AT------------------------------------------- +c_briggsae-chrII_+_/43862-4631 -CAG--C-TT-C----TG-C---CACATCAGCATTCAAATGATC------ +c_brenneri-Cbre_Contig60_+_/62 -CGG--C-TT-C----CG-C---CACATCCGCATTCAAATGATC------ +c_remanei-Crem_Contig172_-_/12 -CAG--C-CT-C----TG-C---CACGTCCGCATTCAAATG-CTC----- +c_elegans-II_+_/9706834-970880 -CAG--C-TT-C----TG-C---AACGTCAGCATTCAGATGATC------ +c_remanei-Crem_Contig172zot_-_ ATGAT-T-TTATA---TGA----TGTACC-ATAAGGAAATAGT-C----- +c_elegans-II_+_meh/9706834-970 --AAT-TATT-T----TGA----TATA---G-AAAGAAACGGTA------ +c_brenneri-Cbre_Contig60fee_+_ -CAG------ATGAG-CGGT---TG-ACC-A---GAGAACAAC-C----- + + +c_briggsae-chrIfooI_+_/43862-4 --------- +c_brenneri-Cbre_Contig60gak_+_ --------- +c_remanei-Crem_Contig172foo_-_ --------- +c_elegans-II_+_more/9706834-97 --------- +c_briggsae-chrII_+_bar/43862-4 --------- +c_briggsae-chrII_+_/43862-4631 --------- +c_brenneri-Cbre_Contig60_+_/62 --------- +c_remanei-Crem_Contig172_-_/12 --------- +c_elegans-II_+_/9706834-970880 --------- +c_remanei-Crem_Contig172zot_-_ --------- +c_elegans-II_+_meh/9706834-970 --------- +c_brenneri-Cbre_Contig60fee_+_ --------- +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rgClustal_testout03.fasta Sun Oct 02 15:32:37 2022 +0000 @@ -0,0 +1,458 @@ +CLUSTAL 2.1 multiple sequence alignment + + +14== ------------------------------------MESGNV-SSSLFGNVSTA-LRPEA +15== ------------------------------------MEYHNV-SSVL-GNVSSV-LRPDA +16== ------------------------------------ME-------PL-CNASEPPLRPEA +17== ------------------------------------MD-------AL-CNASEPPLRPEA +18== -----------------------------------------------MTNATG----PQM +19== -----------------------------------------------MANVTG----PQM +20== ------------------------------------ME-SFA----VAAAQLG----PH- +21== ------------------------------------ME-SFA----VAAAQLG----PH- +22== ------------------------------------MD-SFA----AVATQLG----PQ- +23== ------------------------------------MERSHLPETPFDLAHSG----PR- +24== ------------------------------------MERSLLPEPPLAMALLG----PR- +25== -----------------------------------------------MIAVSG----PS- +26== ------------------------------------------MANQLSYSSLGW---P-- +27== ------------------------------------------------------------ +28== ------------------------------------------------------------ +1== -----------------------------------------------------MNGT-E- +2== -----------------------------------------------------MNGT-E- +4=p -----------------------------------------------------MNGT-E- +5=p -----------------------------------------------------MNGT-E- +3== -----------------------------------------------------MNGT-E- +6== -----------------------------------------------------MKQVPEF +7== -----------------------------------------------------MRKMSE- +9== -----------------------------------------MAQQWSLQRLAGRHPQDSY +10== -----------------------------------------MAQQWSLQRLAGRHPQDSY +8=opsin_ ------------------------------------------------------------ +11== -----------------------------------------MTEAWNVAVFAARRSRDD- +12== -----------------------------------------MA-AWEAA-FAARRRHEE- +13== ------------------------------------------------------------ +30== ------------------------------------------------------------ +31=p ------------------------------------------------------------ +29== ---------------------MMDVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDGGADP +32== -----------------------------------------------MDVL-SPGQ-GNN +33=p -----------------------------------------------MDVF-SFGQ-GNN +34== MANFTFGDLALDVARM-GGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFING +35=p MANFTFGDLALDVARM-GGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFING +36== ---------------MEGAEGQEELDWEALYLRLP-LQ---------NCSWNSTGWEPNW + + +14== RLSA---ETRLLGWN------VPPEELRH-IPEHWLTYPE-PPES--MNYLLGT---LYI +15== RLSA---ESRLLGWN------VPPDELRH-IPEHWLIYPE-PPES--MNYLLGT---LYI +16== R-SSGNGDLQFLGWN------VPPDQIQY-IPEHWLTQLE-PPAS--MHYMLGV---FYI +17== RMSSGSDELQFLGWN------VPPDQIQY-IPEHWLTQLE-PPAS--MHYMLGV---FYI +18== AYYGAASMDFGYPEGVSIVDFVRPE-IKPYVHQHWYNY---PPVNPMWHYLLGV---IYL +19== AFYGSGAATFGYPEGMTVADFV-PDRVKHMVLDHWYNY---PPVNPMWHYLLGV---VYL +20== -F-A-PL------SNGSVVDKVTPD-MAHLISPYWNQF---PAMDPIWAKILTA---YMI +21== -F-A-PL------SNGSVVDKVTPD-MAHLISPYWNQF---PAMDPIWAKILTA---YMI +22== -F-AAP-------SNGSVVDKVTPD-MAHLISPYWDQF---PAMDPIWAKILTA---YMI +23== -FQAQSS------GNGSVLDNVLPD-MAHLVNPYWSRFA--P-MDPMMSKILGL---FTL +24== -FEAQTG------GNRSVLDNVLPD-MAPLVNPHWSRFA--P-MDPTMSKILGL---FTL +25== -YEAFSYGGQARFNNQTVVDKVPPD-MLHLIDANWYQY---PPLNPMWHGILG----FVI +26== -Y--QP--------NASVVDTMPKE-MLYMIHEHWYAF---PPMNPLWYSILGV---AMI +27== -----MVESTTLV-NQTW--WYNPTVDIH---PHWAKFDPIP--DAVYYS-VG----IFI +28== -----M--GRDLRDNETW--WYNPSIVVH---PHWREFDQVP--DAVYYS-LG----IFI +1== GDNFYV-PF----SNKTGLARSPYE------YPQY-YLA------EPWKYSALA---AYM +2== GPNFYV-PF----SNITGVVRSPFE------QPQY-YLA------EPWQFSMLA---AYM +4=p GKNFYV-PM----SNRTGLVRSPFE------YPQY-YLA------EPWQFKILA---LYL +5=p GNNFYV-PL----SNRTGLVRSPFE------YPQY-YLA------EPWQFKLLA---VYM +3== GINFYV-PM----SNKTGVVRSPFE------YPQY-YLA------EPWKYRLVC---CYI +6== HEDFYI-PIPLDINNLSAY--SPFL------VPQD-HLG------NQGIFMAMS---VFM +7== -EEFYLF------KNISSV--GPWD------GPQY-HIA------PVWAFYLQA---AFM +9== EDSTQSSIFTYTNSNST---RGPFE------GPNY-HIA------PRWVYHLTS---VWM +10== EDSTQSSIFTYTNSNST---RGPFE------GPNY-HIA------PRWVYHLTS---VWM +8=opsin_ ------------------------------------------------------------ +11== DDTTRGSVFTYTNTNNT---RGPFE------GPNY-HIA------PRWVYNLVS---FFM +12== EDTTRDSVFTYTNSNNT---RGPFE------GPNY-HIA------PRWVYNLTS---VWM +13== ----MSSNSSQAPPNGT---PGPFD------GPQWPYQA------PQSTYVGVA---VLM +30== -----MPHLLSGFLEVTASPAPT----WDAPPDNVSGCGEQINYGRVEKVVIGS----IL +31=p -----MPHLLSGFLEVTASPAPT----WDAPPDNVSGCGEQINYGRVEKVVIGS----IL +29== VAGSWAPHLLS---EVTASPAPT----WDAPPDNASGCGEQINYGRVEKVVIGS----IL +32== TTSPPAPFETGG--NTTGISDVTVS-YQ----------------------VITS---LLL +33=p TTASQEPFGTGG--NVTSISDVTFS-YQ----------------------VITS---LLL +34== SHSSRSRDNASA--NDTSATNMTDDRYW------------SLTVYSHEHLVLTS---VIL +35=p SHSSRSRDNASA--NDTSATNMTDDRYW------------SLTVYSHEHLVLTS---VIL +36== --------------NVTVVPNTT---WWQA----------SAPFDTPAALVRAAAKAVVL + + +14== -FFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDF-MMMVK-TPIFIYNSFHQGY +15== -FFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDF-MMMIK-TPIFIYNSFHQGY +16== -FLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL-IMCLK-APIF--NSFHRGF +17== -FLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL-IMCLK-APIFIYNSFHRGF +18== -FLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGG- +19== -FLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGG- +20== -MIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYFE-- +21== -MIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYFE-- +22== -IIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYFE-- +23== -AIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYYE-- +24== -VILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYYE-- +25== GMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYYE-- +26== -ILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFAE-- +27== GVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFMK-- +28== GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-- +1== FFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMNGY- +2== FLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLHGY- +4=p FFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAINGY- +5=p FFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAINGY- +3== FFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWNGY- +6== FFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFNRY- +7== GTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPV-FVASCNGY- +9== IFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVYGY- +10== IFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVSGY- +8=opsin_ --------------------------------------DLAETVIA-STISIVNQVSGY- +11== IIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIFGY- +12== IFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQISGY- +13== GTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNINGF- +30== TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGG- +31=p TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGG- +29== TLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGG- +32== GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVLN-- +33=p GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVLN-- +34== GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEISK-- +35=p GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEISK-- +36== GLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVVQ-- + . . + +14== A--LGHLGCQIFGIIGSYTGIAAGA-TNAFIAYDRFNVITRPMEG-K-MTHGKAIAMIIF +15== A--LGHLGCQIFGVIGSYTGIAAGA-TNAFIAYDRYNVITRPMEG-K-MTHGKAIAMIIF +16== AIYLGNTWCQIFASIGSYSGIGAGM-TNAAIGYDRYNVITKPMNR-N-MTFTKAVIMNII +17== A--LGNTWCQIFASIGSYSGIGAGM-TNAAIGYDRYNVITKPMNR-N-MTFTKAVIMNII +18== VWMFSPQYCEIYACLGAITGVC-SIWLLCMISFDRYNIICNGFNG-PKLTTGKAVVFALI +19== RWMFSGTYCEIYAALGAITGVC-SIWTLCMISFDRYNIICNGFNG-PKLTQGKATFMCGL +20== TWVLGPMMCDIYAGLGSAFG-CSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKM-- +21== TWVLGPMMCDIYAGLGSAFG-CSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY +22== TWVLGPMMCDIYAGLGSAFG-CSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY +23== TWVLGPLWCDIYAGCGSLFG-CVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKILF +24== TWVLGPLWCDIYAACGSLFG-CVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKIAF +25== TWVLGPLFCQIYAMLGSLFG-CGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALIRIIA +26== TWILGPFMCEVYGMAGSLFG-CASIWSMVMITLDRYNVIVRGMAA-APLTHKKATLLLLF +27== KWIFGKVACQLYGLLGGIFG-FMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIF +28== KWIFGFAACKVYGFIGGIFG-FMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIF +1== -FVFGPTMCSIEGFFATLGG-EVALWSLVVLAIERYIVICKPM-GNFRFGNTHAIMGVAF +2== -FVFGPTGCNLEGFFATLGG-EIGLWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAF +4=p -FVLGPTGCAVEGFMATLGG-EVALWSLVVLAIERYIVVCKPM-GSFKFSSSHAFAGIAF +5=p -FALGPTGCAVEGFMATLGG-EVALWSLVVLAIERYIVVCKPM-GSFKFSSTHASAGIAF +3== -FVFGPVGCAVEGFFATLGG-QVALWSLVVLAIERYIVVCKPM-GNFRFSATHAMMGIAF +6== -FIFGATACKIEGFLATLGG-MVGLWSLAVVAFERWLVICKPL-GNFTFKTPHAIAGCIL +7== -FVFGRHVCALEGFLGTVAG-LVTGWSLAFLAFERYIVICKPF-GNFRFSSKHALTVVLA +9== -FVLGHPMCVLEGYTVSLCG-ITGLWSLAIISWERWMVVCKPF-GNVRFDAKLAIVGIAF +10== -FVLGHPMCVLEGYTVSLCG-ITGLWSLAIISWERWLVVCKPF-GNVRFDAKLAIVGIAF +8=opsin_ -FVLGHPMCVLEGYTVSLCG-ITGLWSLAIISWERWLVVCKPF-GNVRFDAKLAIVGIAF +11== -FILGHPLCVIEGYVVSSCG-ITGLWSLAIISWERWFVVCKPF-GNIKFDSKLAIIGIVF +12== -FILGHPMCVVEGYTVSACG-ITALWSLAIISWERWFVVCKPF-GNIKFDGKLAVAGILF +13== -FVFGRRMCELEGFMVSLTG-IVGLWSLAILALERYVVVCKPL-GDFQFQRRHAVSGCAF +30== KWIFGHFFCNVFIAMDVMCC-TASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS +31=p KWIFGHFFCNVFIAMDVMCC-TASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS +29== KWIFGHFFCNVFIAMDVMCC-TASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS +32== KWTLGQVTCDLFIALDVLCC-TSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL +33=p KWTLGQVTCDLFIALDVLCC-TSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL +34== VWFLHSEVCDMWISVDVLCC-TASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV +35=p VWFLHSEVCDMWISVDVLCC-TASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV +36== RWTLGPELCDMWTSGDVLCC-TASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIAC + : * : : :*: : : + +14== IYMYATPWV-VACYTETW------GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFS +15== IYLYATPWV-VACYTESW------GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFS +16== IWLYCTPWV-VLPLTQFW------DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFFFS +17== IWLYCTPWV-VLPLTQFW------DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFLFS +18== SWVIAIGCA-LPPFF-GW------GNYILEGILDSCSYDYLT--QDFNTFSYNIFIFVFD +19== AWVISVGWS-LPPFF-GW------GSYTLEGILDSCSYDYFT--RDMNTITYNICIFIFD +20== --------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFV +21== IWFMSSIWC-LAPAF-GW------SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFV +22== IWFMSTIWCCLAPVF-GW------SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFV +23== IWMMAVFWT-VMPLI-GW------SAYVPEGNLTACSIDYMT--RMWNPRSYLITYSLFV +24== IWMMAVFWT-IMPLI-GW------SSYVPEGNLTACSIDYMT--RQWNPRSYLITYSLFV +25== IWLFSLGWT-IAPMF-GW------NRYVPEGNMTACGTDYFN--RGLLSASYLVCYGIWV +26== VWIWSGGWT-ILPFF-GW------SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYGLAV +27== VWMWSIVWS-VGPVF-NW------GAYVPEGILTSCSFDYLS--TDPSTRSFILCMYFCG +28== VWLWSVLWA-IGPIF-GW------GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMFILG +1== TWIMALACA-APPLV-GW------SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVH +2== TWVMALACA-APPLV-GW------SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVH +4=p TWVMALACA-APPLF-GW------SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCH +5=p TWVMAMACA-APPLV-GW------SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICH +3== TWVMAFSCA-APPLF-GW------SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIH +6== PWISALAAS-LPPLF-GW------SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFC +7== TWTIGIGVS-IPPFF-GW------SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFC +9== SWIWAAVWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTC +10== SWIWSAVWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTC +8=opsin_ SWIWAAVWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTC +11== SWVWAWGWS-APPIF-GW------SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITC +12== SWLWSCAWT-APPIF-GW------SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTC +13== TWGWALLWS-APPLL-GW------SSYVPEGLRTSCGPNWYTGGS--NNNSYILSLFVTC +30== VWLLSASIT-LPPLF-GW-----AQNVNDDKV---CLIS--------QDFGYTIYSTAVA +31=p VWLLSASIT-LPPLF-GW-----AQNVNDDKV---CLIS--------QDFGYTIYSTAVA +29== VWLLSASIT-LPPLF-GW-----AQNVNDDKV---CLIS--------QDFGYTIYSTAVA +32== TWLIGFLIS-IPPML-GWRTPE--DRSDPDA----CTIS--------KDHGYTIYSTFGA +33=p TWLIGFLIS-IPPML-GWRTPE--DRSDPDA----CTIS--------KDHGYTIYSTFGA +34== VWIVALFIS-IPPLF-GWRDPN-N---DPDKTG-TCIIS--------QDKGYTIFSTVGA +35=p VWIVALFIS-IPPLF-GWRDPN-N---DPDKTG-TCIIS--------QDKGYTIFSTVGA +36== VWTVSFFVC-IAQLL-GWKDPDWNQRVSEDL---RCVVS--------QDVGYQIFATASS + . * . + +14== FVCPTTMITYYYSQIVGHVFSHEKAL---------------------------------- +15== FVCPTTMITYYYSQIVGHVFSHEKAL---------------------------------- +16== FVCPTLMILYYYSQIVGHVFSHEKAL---------------------------------- +17== FVVPTLMILYYYSQIVGHVFNHEKAL---------------------------------- +18== YFLPAAIIVFSYVFIVKAIFAHEAAM---------------------------------- +19== FFLPASVIVFSYVFIVKAIFAHEAAM---------------------------------- +20== YYIPLFLICYSYWFIIAAVSAHEKAM---------------------------------- +21== YYIPLFLICYSYWFIIAAVSAHEKAM---------------------------------- +22== YYIPLFLICYSYWFIIAAVSAHEKAM---------------------------------- +23== YYTPLFLICYSYWFIIAAVAAHEKAM---------------------------------- +24== YYTPLFMICYSYWFIIATVAAHEKAM---------------------------------- +25== YFVPLFLIIYSYWFIIQAVAAHEKNM---------------------------------- +26== YFLPLITMIYCYFFIVHAVAEHEKQL---------------------------------- +27== FMLPIIIIAFCYFNIVMSVSNHEKEM---------------------------------- +28== FFGPILIIFFCYFNIVMSVSNHEKEM---------------------------------- +1== FLVPFVIIFFCYGRLLCTV----------------------------------------- +2== FTIPMIVIFFCYGQLVFTV----------------------------------------- +4=p FILPVAVIFFTYGRLVCTV----------------------------------------- +5=p FILPVTIIFFTYGRLVCTV----------------------------------------- +3== FIIPVVVIFFSYGRLICKV----------------------------------------- +6== FAVPFGTIVFCYGQLLITL----------------------------------------- +7== FIVPLSLICFSYTQLLRAL----------------------------------------- +9== CITPLSIIVLCYLQVWLAI----------------------------------------- +10== CIIPLAIIMLCYLQVWLAI----------------------------------------- +8=opsin_ CITPLSIIVLCYLQVWLAI----------------------------------------- +11== CFLPLFIIIVCYLQVWMAI----------------------------------------- +12== CFFPLAIIILCYLQVWLAI----------------------------------------- +13== FVLPLSLILFSYTNLLLTL----------------------------------------- +30== FYIPMSVMLFMYYQIYKAARKSAAK--HKF-------------------P---------- +31=p FYIPMSVMLFMYYQIYKAARKSAAK--HKF-------------------P---------- +29== FYIPMSVMLFMYYQIYKAARKSAAK--HKF-------------------P---------- +32== FYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASP----APQPKKS----VN +33=p FYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSS----APPPKKS----LN +34== FYLPMLVMMIIYIRIWLVARSRIRK--DKFQ--MTKARLKTEETTLVASPKTEY--SVVS +35=p FYLPMLVMMIIYIRIWLVARSRIRK--DKFQ--MTKARLKTEETTLVASPKTEY--SVVS +36== FYVPVLIILILYWRIYQTARKRIRR--RR----GATARGG------VGPPPVPAGGALVA + * : * : + +14== ----------------------------RDQAKKM----------------NVES----- +15== ----------------------------RDQAKKM----------------NVDS----- +16== ----------------------------REQAKKM----------------NVES----- +17== ----------------------------REQAKKM----------------NVES----- +18== ----------------------------RAQAKKM----------------NVST----- +19== ----------------------------RAQAKKM----------------NVTN----- +20== ----------------------------REQAKKM----------------NVKS----- +21== ----------------------------REQAKKM----------------NVKS----- +22== ----------------------------REQAKKM----------------NVKS----- +23== ----------------------------REQAKKM----------------NVKS----- +24== ----------------------------RDQAKKM----------------NVKS----- +25== ----------------------------REQAKKM----------------NVAS----- +26== ----------------------------REQAKKM----------------NVAS----- +27== ----------------------------AAMAKRL----------------NAKE----- +28== ----------------------------AAMAKRL----------------NAKE----- +1== ----------------------------KEAAAA-------------------------- +2== ----------------------------KEAAAQ-------------------------- +4=p ----------------------------KAAAAQ-------------------------- +5=p ----------------------------KAAAAQ-------------------------- +3== ----------------------------REAAAQ-------------------------- +6== ----------------------------KLAAKA-------------------------- +7== ----------------------------KAVAAQ-------------------------- +9== ----------------------------RAVAKQ-------------------------- +10== ----------------------------RAVAKQ-------------------------- +8=opsin_ ----------------------------RAVAKQ-------------------------- +11== ----------------------------RAVAAQ-------------------------- +12== ----------------------------RAVAAQ-------------------------- +13== ----------------------------RAAAAQ-------------------------- +30== ------------------------G-FPRVQ---------PESVISLNGVVKLQK----- +31=p ------------------------G-FPRVQ---------PESVISLNGVVKLQK----- +29== ------------------------G-FPRVE---------PDSVIALNGIVKLQK----- +32== GESGSRNWRLGVESKAGGALCAN-G-AVRQGDDGAALEVIE-----VHRVGNSKEHLPL- +33=p GQPGSGDWRRCAENRAVGTPCTN-G-AVRQGDDEATLEVIE-----VHRVGNSKEHLPL- +34== DCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQI +35=p DCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQI +36== ---GGGSGGIAA------AVVAVIG---RP---------LP----------TISE----- + + +14== ---------------------LRSNV-DKNKE---------------------------- +15== ---------------------LRSNV-DKSKE---------------------------- +16== ---------------------LRSNV-DKSKE---------------------------- +17== ---------------------LRSNV-DKSKE---------------------------- +18== ---------------------LRSNEADAQR----------------------------- +19== ---------------------LRSNEAETQR----------------------------- +20== ---------------------LRSSE-DAEK----------------------------- +21== ---------------------LRSSE-DAEK----------------------------- +22== ---------------------LRSSE-DADK----------------------------- +23== ---------------------LRSSE-DCDK----------------------------- +24== ---------------------LRSSE-DCDK----------------------------- +25== ---------------------LRSSE-NQNT----------------------------- +26== ---------------------LRANA-DQQKQ---------------------------- +27== ---------------------LRKAQ---AGA---------------------------- +28== ---------------------LRKAQ---AGA---------------------------- +1== ----------------------QQESASTQK----------------------------- +2== ----------------------QQESATTQK----------------------------- +4=p ----------------------QQDSASTQK----------------------------- +5=p ----------------------QQDSASTQK----------------------------- +3== ----------------------QQESATTQK----------------------------- +6== ----------------------QADSASTQK----------------------------- +7== ----------------------QQESATTQK----------------------------- +9== ----------------------QKESESTQK----------------------------- +10== ----------------------QKESESTQK----------------------------- +8=opsin_ ----------------------QKESESTQK----------------------------- +11== ----------------------QKESESTQK----------------------------- +12== ----------------------QKESESTQK----------------------------- +13== ----------------------QKEADTTQR----------------------------- +30== ---------------------EVEECAN------------------------LSRLLKHE +31=p ---------------------EVEECAN------------------------LSRLLKHE +29== ---------------------EVEECAN------------------------LSRLLKHE +32== ---PSEAGPTPCA----PASFERKNERNAEA----------------------KR----- +33=p ---PSESGSNSYA----PACLERKNERNAEA----------------------KR----- +34== QIETAEAFANGCAEEASIAMLERQ-CNNGKKISSNDTP---Y---------SRTR----E +35=p QIETAEAFANGCAEEASIAMLERQ-CNNGKKISSNDTP---Y---------SRTR----E +36== --TTTTGFTNVSSNNTSP---EKQSCANGLE---ADPPTTGYGAVAAAYYPSLVRRKPKE + + +14== -------TAEIRIAKAAITICFLFFCSWTPYGVM-SLIGAF----GDKTLLTPGATMIPA +15== -------AAEIRIAKAAITICFLFFASWTPYGVM-SLIGAF----GDKTLLTPGATMIPA +16== -------TAEIRIAKAAITICFLFFVSWTPYGVM-SLIGAF----GDKSLLTQGATMIPA +17== -------TAEIRIAKAAITICFLFFVSWTPYGVM-SLIGAF----GDKSLLTPGATMIPA +18== --------AEIRIAKTALVNVSLWFICWTPYALI-SLKGVMGDTSG----ITPLVSTLPA +19== --------AEIRIAKTALVNVSLWFICWTPYAAI-TIQGLLGNAEG----ITPLLTTLPA +20== -------SAEGKLAKVALVTITLWFMAWTPYLVINCM-GLF-KFEG----LTPLNTIWGA +21== -------SAEGKLAKVALVTITLWFMAWTPYLVINCM-GLF-KFEG----LTPLNTIWGA +22== -------SAEGKLAKVALVTISLWFMAWTPYLVINCM-GLF-KFEG----LTPLNTIWGA +23== -------SAEGKLAKVALTTISLWFMAWTPYLVI-CYFGLF-KIDG----LTPLTTIWGA +24== -------SAENKLAKVALTTISLWFMAWTPYLII-CYFGLF-KIDG----LTPLTTIWGA +25== -------SAECKLAKVALMTISLWFMAWTPYLVI-NFSGIF-NLVK----ISPLFTIWGS +26== -------SAECRLAKVAMMTVGLWFMAWTPYLII-SWAGVF-S-SGTR--LTPLATIWGS +27== -------SAEMKLAKISMVIITQFMLSWSPYAII-ALLAQF----GPAEWVTPYAAELPV +28== -------NAEMRLAKISIVIVSQFLLSWSPYAVV-ALLAQF----GPLEWVTPYAAQLPV +1== --------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFTH---QGSD--FGATFMTLPA +2== --------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFTH---QGSN--FGPIFMTLPA +4=p --------AEREVTKMVILMVFGFLIAWTPYATVAAWIFFN---KGAD--FSAKFMAIPA +5=p --------AEREVTKMVILMVLGFLVAWTPYATVAAWIFFN---KGAA--FSAQFMAIPA +3== --------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFTN---KGAD--FTATLMAVPA +6== --------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVSH---RGEE--FDLRMATIPS +7== --------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNN---RNHG--LDLRLVTIPS +9== --------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAAN---PGYP--FHPLMAALPA +10== --------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAAN---PGYA--FHPLMAALPA +8=opsin_ --------AEKEVTRMVVVMVLAFC----------------------------------- +11== --------AEREVSRMVVVMIVAFCICWGPYASFVSFAAAN---PGYA--FHPLAAALPA +12== --------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAAN---PGYA--FHPLAAALPA +13== --------AEREVTRMVIVMVMAFLLCWLPYSTFALVVATH---KGII--IQPVLASLPS +30== RKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFI--CGTSCSCIPLWVERTCL +31=p RKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFI--CGTSCSCIPLWVERTCL +29== RKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFI--CGTSCSCIPLWVERTFL +32== KMAL---ARERKTVKTLGIIMGTFILCWLPFFIVALVLPF---CESSCH-MPTLLGAIIN +33=p KMAL---ARERKTVKTLGIIMGTFILCWLPFFIVALVLPF---CESSCH-MPALLGAIIN +34== KLEL---KRERKAARTLAIITGAFLICWLPFFIIALIGPF---VD--PEGIPPFARSFVL +35=p KLEL---KRERKAARTLAIITGAFLICWLPFFIIALIGPF---VD--PEGIPPFARSFVL +36== AADS---KRERKAAKTLAIITGAFVACWLPFFVLAILVPT---CD--CE-VSPVLTSLSL + * . : + +14== CACKMVACIDPFVYAISHPRYRMELQKRCP--WLALNE--KAPESSAVASTSTTQEP-QQ +15== CTCKMVACIDPFVYAISHPRYRMELQKRCP--WLAISE--KAPESRAAISTSTTQEQ-QQ +16== CTCKLVACIDPFVYAISHPRYRLELQKRCP--WLGVNE--KSGEISSAQST-TTQEQ-QQ +17== CTCKLVACIEPFVYAISHPRYRMELQKRCP--WLGVNE--KSGEASSAQST-TTQEQTQQ +18== LLAKSCSCYNPFVYAISHPKYRLAITQHLP--WFCV-H--ETETKSND----DSQSN--S +19== LLAKSCSCYNPFVYAISHPKFRLAITQHLP--WFCV-H--EKDP--NDV--EENQSS--N +20== CFAKSAACYNPIVYGISHPKYRLALKEKCP---CCVFG--KVD----DGKSSDAQSQ--A +21== CFAKSAACYNPIVYGISHPKYRLALKEKCP---CCVFG--KVD----DGKSSDAQSQ--A +22== CFAKSAACYNPIVYGISHPKYRLALKEKCP---CCVFG--KVD----DGKSSEAQSQ--A +23== TFAKTSAVYNPIVYGISHPKYRIVLKEKCP---MCVFG--NTDEPKPDAPASDTE----- +24== TFAKTSAVYNPIVYGISHPNDRLVLKEKCP---MCVCG--TTDEPKPDAPPSDTE----- +25== LFAKANAVYNPIVYGISHPKYRAALFAKFPS-LACA------AEPSSDA-VSTTSGT--T +26== VFAKANSCYNPIVYGISHPRYKAALYQRFPS-LACGSG-----ESGSDV---KSEAS--A +27== LFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQF--DEKE-CEDANDAEEEVVASE +28== MFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF--DDKE-TEDDKDAETEIPAGE +1== FFAKSSALYNPVIYILMNKQFRNCMITTLC----CGKNPLGDDE--SGASTSKTEVSSVS +2== FFAKTASIYNPIIYIMMNKQFRNCMLTSLC----CGKNPLGDDE--ASATASKTE----- +4=p FFSKSSALYNPVIYVLLNKQFRNCMLTTIF----CGKNPLGDDE-SSTVSTSKTEVSSVS +5=p FFSKTSALYNPVIYVLLNKQFRSCMLTTLF----CGKNPLGDEE-SSTVSTSKTEVSSVS +3== FFSKSSSLYNPIIYVLMNKQFRNCMITTIC----CGKNPFGDEDVSSTVSQSKTEVSSVS +6== CLSKASTVYNPVIYVLMNKQFRSCMMKMV-----CGKN-IEEDE--ASTSSQVTQVSSVA +7== FFSKSACIYNPIIYCFMNKQFQACIMKMV-----CGKA-MTDES--DTCSSQKTEVSTVS +9== FFAKSATIYNPVIYVFMNRQFRNCILQLF------G---KKVDDGSELSSASKTEVSSVS +10== YFAKSATIYNPVIYVFMNRQFRNCILQLF------G---KKVDDGSELSSASKTEVSSVS +8=opsin_ ------------------------------------------------------------ +11== YFAKSATIYNPVIYVFMNRQFRNCIMQLF------G---KKVDDGSEASTTSRTEVSSVS +12== YFAKSATIYNPIIYVFMNRQFRNCILQLF------G---KKVDDGSEVST-SRTEVSSVS +13== YFSKTATVYNPIIYVFMNKQFQSCLLEMLC----CGYQPQRTGKASPGTPGPHADVTAAG +30== WLGYANSLINPFIYAFFNRDLRPTSRSLLQ----CQY-RNINRKLSAAGMHEALKLAERP +31=p WLGYANSLINPFIYAFFNRDLRTTYRSLLQ----CQY-RNINRKLSAAGMHEALKLAERP +29== WLGYANSLINPFIYAFFNRDLRTTYRSLLQ----CQY-RNINRKLSAAGMHEALKLAERP +32== WLGYSNSLLNPVIYAYFNKDFQNAFKKIIK----CKFCRQ-------------------- +33=p WLGYSNSLLNPVIYAYFNKDFQNAFKKIIK----CKFCRR-------------------- +34== WLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYRRGHR----------------- +35=p WLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYRRGHR----------------- +36== WLGYFNSTLNPVIYTVFSPEFRHAFQRLL-----CG--RRVRRRRAPQ------------ + + +14== TTAA-------------------------------------------------------- +15== TTAA-------------------------------------------------------- +16== TTAA-------------------------------------------------------- +17== TSAA-------------------------------------------------------- +18== TVAQDKA----------------------------------------------------- +19== TQTQEKS----------------------------------------------------- +20== TASEAE-SKA-------------------------------------------------- +21== TASEAE-SKA-------------------------------------------------- +22== TTSEAE-SKA-------------------------------------------------- +23== TTSEAD-SKA-------------------------------------------------- +24== TTSEAE-SKD-------------------------------------------------- +25== TVTDNEKSNA-------------------------------------------------- +26== TTTMEEKPKIPEA----------------------------------------------- +27== R--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPP +28== SSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG-YPP-QGYPP +1== T-SPVSPA---------------------------------------------------- +2== T-SQVAPA---------------------------------------------------- +4=p ------PA---------------------------------------------------- +5=p ------PA---------------------------------------------------- +3== S-SQVSPA---------------------------------------------------- +6== ------PEK--------------------------------------------------- +7== S-TQVGPN---------------------------------------------------- +9== ---SVSPA---------------------------------------------------- +10== ---SVSPA---------------------------------------------------- +8=opsin_ ------------------------------------------------------------ +11== N-SSVAPA---------------------------------------------------- +12== N-SSVSPA---------------------------------------------------- +13== LRNKVMPAHPV------------------------------------------------- +30== ERSEFVLQNSDHCGKKGHDT---------------------------------------- +31=p ERSEFVLQNSDHCGKKGHDT---------------------------------------- +29== ERPEFVLQNADYCRKKGHDS---------------------------------------- +32== ------------------------------------------------------------ +33=p ------------------------------------------------------------ +34== ------------------------------------------------------------ +35=p ------------------------------------------------------------ +36== ------------------------------------------------------------ + + +14== ---------------------------------------- +15== ---------------------------------------- +16== ---------------------------------------- +17== ---------------------------------------- +18== ---------------------------------------- +19== ---------------------------------------- +20== ---------------------------------------- +21== ---------------------------------------- +22== ---------------------------------------- +23== ---------------------------------------- +24== ---------------------------------------- +25== ---------------------------------------- +26== ---------------------------------------- +27== QGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA +28== QGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA +1== ---------------------------------------- +2== ---------------------------------------- +4=p ---------------------------------------- +5=p ---------------------------------------- +3== ---------------------------------------- +6== ---------------------------------------- +7== ---------------------------------------- +9== ---------------------------------------- +10== ---------------------------------------- +8=opsin_ ---------------------------------------- +11== ---------------------------------------- +12== ---------------------------------------- +13== ---------------------------------------- +30== ---------------------------------------- +31=p ---------------------------------------- +29== ---------------------------------------- +32== ---------------------------------------- +33=p ---------------------------------------- +34== ---------------------------------------- +35=p ---------------------------------------- +36== ---------------------------------------- +