Mercurial > repos > devteam > cluster
comparison cluster.xml @ 3:765ceb06c3e2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/cluster commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:47:24 -0500 |
| parents | 520de69b107a |
| children | 05696474ee89 |
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| 2:520de69b107a | 3:765ceb06c3e2 |
|---|---|
| 8 <command interpreter="python">gops_cluster.py $input1 $output -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} -d $distance -m $minregions -o $returntype</command> | 8 <command interpreter="python">gops_cluster.py $input1 $output -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} -d $distance -m $minregions -o $returntype</command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param format="interval" name="input1" type="data"> | 10 <param format="interval" name="input1" type="data"> |
| 11 <label>Cluster intervals of</label> | 11 <label>Cluster intervals of</label> |
| 12 </param> | 12 </param> |
| 13 <param name="distance" size="5" type="integer" value="1" help="(bp)"> | 13 <param name="distance" type="integer" value="1" help="(bp)"> |
| 14 <label>max distance between intervals</label> | 14 <label>max distance between intervals</label> |
| 15 </param> | 15 </param> |
| 16 <param name="minregions" size="5" type="integer" value="2"> | 16 <param name="minregions" type="integer" value="2"> |
| 17 <label>min number of intervals per cluster</label> | 17 <label>min number of intervals per cluster</label> |
| 18 </param> | 18 </param> |
| 19 <param name="returntype" type="select" label="Return type"> | 19 <param name="returntype" type="select" label="Return type"> |
| 20 <option value="1">Merge clusters into single intervals</option> | 20 <option value="1">Merge clusters into single intervals</option> |
| 21 <option value="2">Find cluster intervals; preserve comments and order</option> | 21 <option value="2">Find cluster intervals; preserve comments and order</option> |