comparison column_maker.py @ 8:02026300aa45 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_maker commit 276e05a2c72c031318eef8c57deebbbde822b538"

7:427903d47026

import argparse
import json
import re
import sys
# functions that may be used in the compute expression
from math import (  # noqa: F401
    ceil,
    exp,
    floor,
    log,
    log10,
    sqrt
)

from numpy import format_float_positional  # noqa: F401

parser = argparse.ArgumentParser()

valid_expr = True
try:
    exec(code)
except Exception as e:
    out.close()
    if str(e).startswith('invalid syntax'):
        valid_expr = False
        sys.exit('Expression "%s" likely invalid. See tool tips, syntax and examples.' % expr)
    else:
        sys.exit(str(e))

if valid_expr:
    out.close()
    valid_lines = total_lines - skipped_lines
    print('Creating column %d with expression %s' % (in_columns + 1, expr))
    if valid_lines > 0:
        print('kept %4.2f%% of %d lines.' % (100.0 * lines_kept / valid_lines,
                                             total_lines))

8:02026300aa45

import argparse
import json
import re
import sys
# Functions that may be used in the compute expression
from math import (  # noqa: F401
    ceil,
    exp,
    floor,
    log,
    log10,
    sqrt,
)

from numpy import format_float_positional  # noqa: F401

parser = argparse.ArgumentParser()

valid_expr = True
try:
    exec(code)
except Exception as e:
    if str(e).startswith('invalid syntax'):
        valid_expr = False
        sys.exit('Expression "%s" likely invalid. See tool tips, syntax and examples.' % expr)
    else:
        sys.exit(str(e))
finally:
    out.close()

if valid_expr:
    valid_lines = total_lines - skipped_lines
    print('Creating column %d with expression %s' % (in_columns + 1, expr))
    if valid_lines > 0:
        print('kept %4.2f%% of %d lines.' % (100.0 * lines_kept / valid_lines,
                                             total_lines))