comparison column_maker.xml @ 11:61f9ddbc63ca draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/column_maker commit bbe4c5db82c91ea04ca98a7bae1f62a49961d109

10:aff5135563c6

<tool id="Add_a_column1" name="Compute" version="2.1" profile="23.0">
    <description>on rows</description>
    <macros>
        <xml name="compute_repeat">
            <repeat name="expressions" title="Expressions" min="1" default="1">
                <param name="cond" type="text" value="c3-c2" label="Add expression">

    <command detect_errors="aggressive"><![CDATA[
python '$__tool_directory__/column_maker.py'
#if str($error_handling.auto_col_types) == 'on':
    #set $col_types = $input.metadata.column_types
#else:
    #set $col_types = ','.join(['str' for t in $input.metadata.column_types.split(',')])
#end if
--column-types $col_types
$avoid_scientific_notation
#if str($ops.header_lines_select) == 'yes':
    --header

**Expression rules**

- Columns are referenced with **c** and a **number**. For example, **c1** refers to the first column of a tab-delimited file

- The following built-in Python functions are available for use in expressions::

    abs | all | any | ascii | bin | bool | chr | complex | divmod | float | format | hex | int | len | list 
    map | max | min | oct | ord | pow | range | reversed | round | set | sorted | str | sum | type

    acos | acosh | asin | asinh | atan | atan2 | atanh | cbrt | ceil | comb | copysign | cos | cosh | degrees 
    dist | erf | erfc | exp | exp2 | expm1 | fabs | factorial | floor | fmod | frexp | fsum | gamma | gcd
    hypot | inf | isclose | isfinite | isinf | isnan | isqrt | ldexp | lgamma | log | log10 | log1p | log2
    modf | nextafter | perm | pow | prod | remainder | sin | sqrt | tan | tanh | tau | trunc | ulp

- In addition the numpy function ``format_float_positional`` is available to

11:61f9ddbc63ca

<tool id="Add_a_column1" name="Compute" version="2.1+galaxy0" profile="23.0">
    <description>on rows</description>
    <macros>
        <xml name="compute_repeat">
            <repeat name="expressions" title="Expressions" min="1" default="1">
                <param name="cond" type="text" value="c3-c2" label="Add expression">

    <command detect_errors="aggressive"><![CDATA[
python '$__tool_directory__/column_maker.py'
#if str($error_handling.auto_col_types) == 'on':
    #set $col_types = $input.metadata.column_types
#else:
    #set $col_types = ','.join(['str' for t in str($input.metadata.column_types).split(',')])
#end if
--column-types $col_types
$avoid_scientific_notation
#if str($ops.header_lines_select) == 'yes':
    --header

**Expression rules**

- Columns are referenced with **c** and a **number**. For example, **c1** refers to the first column of a tab-delimited file

- Basic arithmetic operations are supported: addition (``+``), subtraction (``-``), multiplication (``*``), division (``/``), modulo (``%``), exponentiation (``**``), floor division (``//``)

- The following built-in Python functions are available for use in expressions::

    abs | all | any | ascii | bin | bool | chr | complex | divmod | float | format | hex | int | len | list
    map | max | min | oct | ord | pow | range | reversed | round | set | sorted | str | sum | type

    acos | acosh | asin | asinh | atan | atan2 | atanh | cbrt | ceil | comb | copysign | cos | cosh | degrees
    dist | erf | erfc | exp | exp2 | expm1 | fabs | factorial | floor | fmod | frexp | fsum | gamma | gcd
    hypot | inf | isclose | isfinite | isinf | isnan | isqrt | ldexp | lgamma | log | log10 | log1p | log2
    modf | nextafter | perm | pow | prod | remainder | sin | sqrt | tan | tanh | tau | trunc | ulp

- In addition the numpy function ``format_float_positional`` is available to