diff test-data/motifs1.tabular @ 0:46325357b948 draft

Uploaded tool tarball.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/motifs1.tabular	Wed Sep 25 10:05:37 2013 -0400
@@ -0,0 +1,122 @@
+deletionHoptspot1	[A/C][G/T][A/G][A/G]GT
+deletionHoptspot1rev	TG[A/G][A/G][G/T][A/C]
+deletionHoptspot1comp	[G/T][A/C][C/T][C/T]CA
+deletionHoptspot1revcomp	AC[C/T][C/T][A/C][G/T]
+deletionHoptspot2	[C/T][C/T][C/T]TG
+deletionHoptspot2rev	GT[C/T][C/T][C/T]
+deletionHoptspot2comp	[A/G][A/G][A/G]AC
+deletionHoptspot2revcomp	CA[A/G][A/G][A/G]
+deletionHoptspot3	CAG[A/G]
+deletionHoptspot3rev	[A/G]GAC
+deletionHoptspot3comp	GTC[C/T]
+deletionHoptspot3revcomp	[C/T]CTG
+dnaPolPauseFrameshift1	GAG
+dnaPolPauseFrameshift1comp	CTC
+dnaPolPauseFrameshift2	ACG
+dnaPolPauseFrameshift2rev	GCA
+dnaPolPauseFrameshift2comp	TGC
+dnaPolPauseFrameshift2revcomp	CGT
+dnaPolPauseFrameshift3	GC[G/C]
+dnaPolPauseFrameshift3rev	[G/C]CG
+dnaPolPauseFrameshift3comp	CG[G/C]
+dnaPolPauseFrameshift3revcomp	[G/C]GC
+dnaPolPauseFrameshift4	[A/T]GGAG
+dnaPolPauseFrameshift4rev	GAGG[A/T]
+dnaPolPauseFrameshift4comp	[A/T]CCTC
+dnaPolPauseFrameshift4revcomp	CTCC[A/T]
+dnaPolPauseFrameshift5	TCCCCC
+dnaPolPauseFrameshift5rev	CCCCCT
+dnaPolPauseFrameshift5comp	AGGGGG
+dnaPolPauseFrameshift5revcomp	GGGGGA
+dnaPolPauseFrameshift6	CTGGCG
+dnaPolPauseFrameshift6rev	GCGGTC
+dnaPolPauseFrameshift6comp	GACCGC
+dnaPolPauseFrameshift6revcomp	CGCCAG
+dnaPolPauseFrameshift7	ACCC[A/T][A/G]
+dnaPolPauseFrameshift7rev	[A/G][A/T]CCCA
+dnaPolPauseFrameshift7comp	TGGG[A/T][T/C]
+dnaPolPauseFrameshift7revcomp	[T/C][A/T]GGGT
+dnaPolPauseFrameshift8	TTTT
+dnaPolPauseFrameshift8comp	AAAA
+dnaPolPauseFrameshift9	TGG[A/C/G/T]GT
+dnaPolPauseFrameshift9rev	TG[A/C/G/T]GGT
+dnaPolPauseFrameshift9comp	ACC[A/C/G/T]CA
+dnaPolPauseFrameshift9revcomp	AC[A/C/G/T]CCA
+dnaPolPauseFrameshift10	ACCCCA
+dnaPolPauseFrameshift10comp	TGGGGT
+indelHotspot1	GTAAGT
+indelHotspot1rev	TGAATG
+indelHotspot1comp	CATTCA
+indelHotspot1revcomp	ACTTAC
+insertionHotspot1	AT[A/C][A/C]GCC
+insertionHotspot1rev	CCG[A/C][A/C]TA
+insertionHotspot1comp	TA[T/G][T/G]CGG
+insertionHotspot1revcomp	GGC[T/G][T/G]AT
+insertionHotspot2	TACC[A/G]C
+insertionHotspot2rev	C[A/G]CCAT
+insertionHotspot2comp	ATGG[T/C]G
+insertionHotspot2revcomp	G[T/C]GGTA
+topoisomeraseCleavageSite1	CAT
+topoisomeraseCleavageSite1rev	TAC
+topoisomeraseCleavageSite1comp	GTA
+topoisomeraseCleavageSite1revcomp	ATG
+topoisomeraseCleavageSite2	CT[T/C]
+topoisomeraseCleavageSite2rev	[T/C]TC
+topoisomeraseCleavageSite2comp	GA[A/G]
+topoisomeraseCleavageSite2revcomp	[A/G]AG
+topoisomeraseCleavageSite3	GT[T/C]
+topoisomeraseCleavageSite3rev	[T/C]TG
+topoisomeraseCleavageSite3comp	CA[A/G]
+topoisomeraseCleavageSite3revcomp	[A/G]AC
+topoisomeraseCleavageSite4	[A/G]A[T/G]
+topoisomeraseCleavageSite4rev	[T/G]A[A/G]
+topoisomeraseCleavageSite4comp	[T/C]T[A/C]
+topoisomeraseCleavageSite4revcomp	[A/C]T[T/C]
+topoisomeraseCleavageSite5	[T/C]CCTT
+topoisomeraseCleavageSite5rev	TTCC[T/C]
+topoisomeraseCleavageSite5comp	[A/G]GGAA
+topoisomeraseCleavageSite5revcomp	AAGG[A/G]
+topoisomeraseCleavageSite6	[T/C]TA
+topoisomeraseCleavageSite6rev	AT[T/C]
+topoisomeraseCleavageSite6comp	[A/G]AT
+topoisomeraseCleavageSite6revcomp	TA[A/G]
+translinTarget1	ATGCAG
+translinTarget1rev	GACGTA
+translinTarget1comp	TACGTC
+translinTarget1revcomp	CTGCAT
+translinTarget2	GCCC[A/T][G/C][G/C][A/T]
+translinTarget2rev	[A/T][G/C][G/C][A/T]CCCG
+translinTarget2comp	CGGG[A/T][G/C][G/C][A/T]
+translinTarget2revcomp	[A/T][G/C][G/C][A/T]GGGC
+vDjRecombinationSignal1	CACAGTG
+vDjRecombinationSignal1rev	GTGACAC
+vDjRecombinationSignal1comp	GTGTCAC
+vDjRecombinationSignal1revcomp	CACTGTG
+vDjRecombinationSignal2	ACAAAAACC
+vDjRecombinationSignal2rev	CCAAAAACA
+vDjRecombinationSignal2comp	TGTTTTTGG
+vDjRecombinationSignal2revcomp	GGTTTTTGT
+x-likeSite1	CCG
+x-likeSite1rev	GCC
+x-likeSite1comp	GGC
+x-likeSite1revcomp	CGG
+x-likeSite2	GCTGGTGG
+x-likeSite2rev	GGTGGTCG
+x-likeSite2comp	CGACCACC
+x-likeSite2revcomp	CCACCAGC
+x-likeSite3	GGGCAGGA[A/C/G/T]G
+x-likeSite3rev	G[A/C/G/T]AGGACGGG
+x-likeSite3comp	CCCGTCCT[A/C/G/T]C
+x-likeSite3revcomp	C[A/C/G/T]TCCTGCCC
+x-likeSite4	GC[A/T]GG[A/T]GG
+x-likeSite4rev	GG[A/T]GG[A/T]CG
+x-likeSite4comp	CG[A/T]CC[A/T]CC
+x-likeSite4revcomp	CC[A/T]CC[A/T]GC
+x-likeSite5	GGAGGTGGGCAGGA[A/G]G
+x-likeSite5rev	G[A/G]AGGACGGGTGGAGG
+x-likeSite5comp	CCTCCACCCGTCCT[T/C]C
+x-likeSite5revcomp	C[T/C]TCCTGCCCACCTCC
+x-likeSite6	AGAGGTGGGCAGGTGG
+x-likeSite6rev	GGTGGACGGGTGGAGA
+x-likeSite6comp	TCTCCACCCGTCCACC
+x-likeSite6revcomp	CCACCTGCCCACCTCT