Mercurial > repos > devteam > compute_motifs_frequency
view test-data/motifs1.tabular @ 1:1f8ee7f9701b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/compute_motifs_frequency commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:07:52 -0500 |
| parents | 46325357b948 |
| children |
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deletionHoptspot1 [A/C][G/T][A/G][A/G]GT deletionHoptspot1rev TG[A/G][A/G][G/T][A/C] deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T] deletionHoptspot2 [C/T][C/T][C/T]TG deletionHoptspot2rev GT[C/T][C/T][C/T] deletionHoptspot2comp [A/G][A/G][A/G]AC deletionHoptspot2revcomp CA[A/G][A/G][A/G] deletionHoptspot3 CAG[A/G] deletionHoptspot3rev [A/G]GAC deletionHoptspot3comp GTC[C/T] deletionHoptspot3revcomp [C/T]CTG dnaPolPauseFrameshift1 GAG dnaPolPauseFrameshift1comp CTC dnaPolPauseFrameshift2 ACG dnaPolPauseFrameshift2rev GCA dnaPolPauseFrameshift2comp TGC dnaPolPauseFrameshift2revcomp CGT dnaPolPauseFrameshift3 GC[G/C] dnaPolPauseFrameshift3rev [G/C]CG dnaPolPauseFrameshift3comp CG[G/C] dnaPolPauseFrameshift3revcomp [G/C]GC dnaPolPauseFrameshift4 [A/T]GGAG dnaPolPauseFrameshift4rev GAGG[A/T] dnaPolPauseFrameshift4comp [A/T]CCTC dnaPolPauseFrameshift4revcomp CTCC[A/T] dnaPolPauseFrameshift5 TCCCCC dnaPolPauseFrameshift5rev CCCCCT dnaPolPauseFrameshift5comp AGGGGG dnaPolPauseFrameshift5revcomp GGGGGA dnaPolPauseFrameshift6 CTGGCG dnaPolPauseFrameshift6rev GCGGTC dnaPolPauseFrameshift6comp GACCGC dnaPolPauseFrameshift6revcomp CGCCAG dnaPolPauseFrameshift7 ACCC[A/T][A/G] dnaPolPauseFrameshift7rev [A/G][A/T]CCCA dnaPolPauseFrameshift7comp TGGG[A/T][T/C] dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT dnaPolPauseFrameshift8 TTTT dnaPolPauseFrameshift8comp AAAA dnaPolPauseFrameshift9 TGG[A/C/G/T]GT dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA dnaPolPauseFrameshift10 ACCCCA dnaPolPauseFrameshift10comp TGGGGT indelHotspot1 GTAAGT indelHotspot1rev TGAATG indelHotspot1comp CATTCA indelHotspot1revcomp ACTTAC insertionHotspot1 AT[A/C][A/C]GCC insertionHotspot1rev CCG[A/C][A/C]TA insertionHotspot1comp TA[T/G][T/G]CGG insertionHotspot1revcomp GGC[T/G][T/G]AT insertionHotspot2 TACC[A/G]C insertionHotspot2rev C[A/G]CCAT insertionHotspot2comp ATGG[T/C]G insertionHotspot2revcomp G[T/C]GGTA topoisomeraseCleavageSite1 CAT topoisomeraseCleavageSite1rev TAC topoisomeraseCleavageSite1comp GTA topoisomeraseCleavageSite1revcomp ATG topoisomeraseCleavageSite2 CT[T/C] topoisomeraseCleavageSite2rev [T/C]TC topoisomeraseCleavageSite2comp GA[A/G] topoisomeraseCleavageSite2revcomp [A/G]AG topoisomeraseCleavageSite3 GT[T/C] topoisomeraseCleavageSite3rev [T/C]TG topoisomeraseCleavageSite3comp CA[A/G] topoisomeraseCleavageSite3revcomp [A/G]AC topoisomeraseCleavageSite4 [A/G]A[T/G] topoisomeraseCleavageSite4rev [T/G]A[A/G] topoisomeraseCleavageSite4comp [T/C]T[A/C] topoisomeraseCleavageSite4revcomp [A/C]T[T/C] topoisomeraseCleavageSite5 [T/C]CCTT topoisomeraseCleavageSite5rev TTCC[T/C] topoisomeraseCleavageSite5comp [A/G]GGAA topoisomeraseCleavageSite5revcomp AAGG[A/G] topoisomeraseCleavageSite6 [T/C]TA topoisomeraseCleavageSite6rev AT[T/C] topoisomeraseCleavageSite6comp [A/G]AT topoisomeraseCleavageSite6revcomp TA[A/G] translinTarget1 ATGCAG translinTarget1rev GACGTA translinTarget1comp TACGTC translinTarget1revcomp CTGCAT translinTarget2 GCCC[A/T][G/C][G/C][A/T] translinTarget2rev [A/T][G/C][G/C][A/T]CCCG translinTarget2comp CGGG[A/T][G/C][G/C][A/T] translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC vDjRecombinationSignal1 CACAGTG vDjRecombinationSignal1rev GTGACAC vDjRecombinationSignal1comp GTGTCAC vDjRecombinationSignal1revcomp CACTGTG vDjRecombinationSignal2 ACAAAAACC vDjRecombinationSignal2rev CCAAAAACA vDjRecombinationSignal2comp TGTTTTTGG vDjRecombinationSignal2revcomp GGTTTTTGT x-likeSite1 CCG x-likeSite1rev GCC x-likeSite1comp GGC x-likeSite1revcomp CGG x-likeSite2 GCTGGTGG x-likeSite2rev GGTGGTCG x-likeSite2comp CGACCACC x-likeSite2revcomp CCACCAGC x-likeSite3 GGGCAGGA[A/C/G/T]G x-likeSite3rev G[A/C/G/T]AGGACGGG x-likeSite3comp CCCGTCCT[A/C/G/T]C x-likeSite3revcomp C[A/C/G/T]TCCTGCCC x-likeSite4 GC[A/T]GG[A/T]GG x-likeSite4rev GG[A/T]GG[A/T]CG x-likeSite4comp CG[A/T]CC[A/T]CC x-likeSite4revcomp CC[A/T]CC[A/T]GC x-likeSite5 GGAGGTGGGCAGGA[A/G]G x-likeSite5rev G[A/G]AGGACGGGTGGAGG x-likeSite5comp CCTCCACCCGTCCT[T/C]C x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC x-likeSite6 AGAGGTGGGCAGGTGG x-likeSite6rev GGTGGACGGGTGGAGA x-likeSite6comp TCTCCACCCGTCCACC x-likeSite6revcomp CCACCTGCCCACCTCT