Mercurial > repos > devteam > count_covariates
comparison test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.csv @ 0:14e304b70425 draft default tip
Imported from capsule None
| author | devteam |
|---|---|
| date | Tue, 01 Apr 2014 10:51:01 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:14e304b70425 |
|---|---|
| 1 # Counted Sites 41 | |
| 2 # Counted Bases 340 | |
| 3 # Skipped Sites 2 | |
| 4 # Fraction Skipped 1 / 21 bp | |
| 5 ReadGroup,QualityScore,Cycle,Dinuc,Homopolymer,MinimumNQS,Position,nObservations,nMismatches,Qempirical | |
| 6 A Fake phiX Sample,26,1,NN,0,26,0,9,0,40 | |
| 7 A Fake phiX Sample,26,1,NN,1,26,0,1,0,40 | |
| 8 A Fake phiX Sample,26,2,AG,0,26,1,1,0,40 | |
| 9 A Fake phiX Sample,26,2,CC,0,26,1,1,0,40 | |
| 10 A Fake phiX Sample,26,2,CG,0,26,1,3,0,40 | |
| 11 A Fake phiX Sample,26,2,GC,0,26,1,2,0,40 | |
| 12 A Fake phiX Sample,26,2,GC,1,26,1,1,0,40 | |
| 13 A Fake phiX Sample,26,2,GT,0,26,1,1,0,40 | |
| 14 A Fake phiX Sample,26,2,TG,1,26,1,1,0,40 | |
| 15 A Fake phiX Sample,26,3,CC,0,26,2,1,0,40 | |
| 16 A Fake phiX Sample,26,3,CG,0,26,2,3,0,40 | |
| 17 A Fake phiX Sample,26,3,GC,0,26,2,1,0,40 | |
| 18 A Fake phiX Sample,26,3,GC,1,26,2,2,0,40 | |
| 19 A Fake phiX Sample,26,3,GG,0,26,2,1,0,40 | |
| 20 A Fake phiX Sample,26,3,GT,0,26,2,1,0,40 | |
| 21 A Fake phiX Sample,26,3,TG,1,26,2,1,0,40 | |
| 22 A Fake phiX Sample,26,4,CC,0,26,3,2,0,40 | |
| 23 A Fake phiX Sample,26,4,CG,0,26,3,2,0,40 | |
| 24 A Fake phiX Sample,26,4,GA,0,26,3,1,0,40 | |
| 25 A Fake phiX Sample,26,4,GC,1,26,3,2,0,40 | |
| 26 A Fake phiX Sample,26,4,GG,0,26,3,1,0,40 | |
| 27 A Fake phiX Sample,26,4,GT,0,26,3,1,0,40 | |
| 28 A Fake phiX Sample,26,4,TG,1,26,3,1,0,40 | |
| 29 A Fake phiX Sample,26,5,AT,0,26,4,1,0,40 | |
| 30 A Fake phiX Sample,26,5,CC,0,26,4,2,0,40 | |
| 31 A Fake phiX Sample,26,5,CG,0,26,4,2,0,40 | |
| 32 A Fake phiX Sample,26,5,GA,0,26,4,1,0,40 | |
| 33 A Fake phiX Sample,26,5,GC,1,26,4,1,0,40 | |
| 34 A Fake phiX Sample,26,5,GG,0,26,4,1,0,40 | |
| 35 A Fake phiX Sample,26,5,GT,0,26,4,1,0,40 | |
| 36 A Fake phiX Sample,26,5,TG,1,26,4,1,0,40 | |
| 37 A Fake phiX Sample,26,6,AT,0,26,5,1,0,40 | |
| 38 A Fake phiX Sample,26,6,CC,0,26,5,1,0,40 | |
| 39 A Fake phiX Sample,26,6,CG,0,26,5,2,0,40 | |
| 40 A Fake phiX Sample,26,6,GA,0,26,5,1,0,40 | |
| 41 A Fake phiX Sample,26,6,GG,0,26,5,1,0,40 | |
| 42 A Fake phiX Sample,26,6,GT,0,26,5,2,0,40 | |
| 43 A Fake phiX Sample,26,6,TG,0,26,5,1,0,40 | |
| 44 A Fake phiX Sample,26,6,TG,1,26,5,1,0,40 | |
| 45 A Fake phiX Sample,26,7,AT,0,26,6,1,0,40 | |
| 46 A Fake phiX Sample,26,7,CG,0,26,6,1,0,40 | |
| 47 A Fake phiX Sample,26,7,GA,0,26,6,2,1,3 | |
| 48 A Fake phiX Sample,26,7,GG,0,26,6,1,0,40 | |
| 49 A Fake phiX Sample,26,7,GT,0,26,6,2,0,40 | |
| 50 A Fake phiX Sample,26,7,TG,0,26,6,1,0,40 | |
| 51 A Fake phiX Sample,26,7,TG,1,26,6,2,0,40 | |
| 52 A Fake phiX Sample,26,8,AC,0,26,7,1,0,40 | |
| 53 A Fake phiX Sample,26,8,AT,0,26,7,1,0,40 | |
| 54 A Fake phiX Sample,26,8,GA,0,26,7,2,1,3 | |
| 55 A Fake phiX Sample,26,8,GG,0,26,7,2,0,40 | |
| 56 A Fake phiX Sample,26,8,GT,0,26,7,1,0,40 | |
| 57 A Fake phiX Sample,26,8,TG,0,26,7,1,0,40 | |
| 58 A Fake phiX Sample,26,8,TG,1,26,7,2,0,40 | |
| 59 A Fake phiX Sample,26,9,AC,0,26,8,1,0,40 | |
| 60 A Fake phiX Sample,26,9,AT,0,26,8,1,0,40 | |
| 61 A Fake phiX Sample,26,9,CT,0,26,8,1,0,40 | |
| 62 A Fake phiX Sample,26,9,GA,0,26,8,3,1,5 | |
| 63 A Fake phiX Sample,26,9,GG,0,26,8,2,0,40 | |
| 64 A Fake phiX Sample,26,9,TG,0,26,8,1,0,40 | |
| 65 A Fake phiX Sample,26,9,TG,1,26,8,1,0,40 | |
| 66 A Fake phiX Sample,26,10,AC,0,26,9,1,0,40 | |
| 67 A Fake phiX Sample,26,10,AT,0,26,9,2,0,40 | |
| 68 A Fake phiX Sample,26,10,CT,0,26,9,1,0,40 | |
| 69 A Fake phiX Sample,26,10,GA,0,26,9,3,1,5 | |
| 70 A Fake phiX Sample,26,10,GG,0,26,9,1,0,40 | |
| 71 A Fake phiX Sample,26,10,TG,0,26,9,2,0,40 | |
| 72 A Fake phiX Sample,26,11,AC,0,26,10,1,0,40 | |
| 73 A Fake phiX Sample,26,11,AT,0,26,10,2,0,40 | |
| 74 A Fake phiX Sample,26,11,CT,0,26,10,1,0,40 | |
| 75 A Fake phiX Sample,26,11,GA,0,26,10,3,1,5 | |
| 76 A Fake phiX Sample,26,11,TG,0,26,10,3,0,40 | |
| 77 A Fake phiX Sample,26,12,AC,0,26,11,1,0,40 | |
| 78 A Fake phiX Sample,26,12,AC,1,26,11,1,0,40 | |
| 79 A Fake phiX Sample,26,12,AT,0,26,11,1,0,40 | |
| 80 A Fake phiX Sample,26,12,CT,0,26,11,1,0,40 | |
| 81 A Fake phiX Sample,26,12,GA,0,26,11,2,1,3 | |
| 82 A Fake phiX Sample,26,12,GC,1,26,11,1,0,40 | |
| 83 A Fake phiX Sample,26,12,TG,0,26,11,3,0,40 | |
| 84 A Fake phiX Sample,26,13,AC,0,26,12,1,0,40 | |
| 85 A Fake phiX Sample,26,13,AC,1,26,12,1,0,40 | |
| 86 A Fake phiX Sample,26,13,CC,0,26,12,2,0,40 | |
| 87 A Fake phiX Sample,26,13,CT,0,26,12,1,0,40 | |
| 88 A Fake phiX Sample,26,13,GA,0,26,12,2,1,3 | |
| 89 A Fake phiX Sample,26,13,GC,1,26,12,1,0,40 | |
| 90 A Fake phiX Sample,26,13,TG,0,26,12,2,0,40 | |
| 91 A Fake phiX Sample,26,14,AC,0,26,13,1,0,40 | |
| 92 A Fake phiX Sample,26,14,AC,1,26,13,1,0,40 | |
| 93 A Fake phiX Sample,26,14,CC,0,26,13,2,0,40 | |
| 94 A Fake phiX Sample,26,14,CG,0,26,13,1,0,40 | |
| 95 A Fake phiX Sample,26,14,CT,0,26,13,2,0,40 | |
| 96 A Fake phiX Sample,26,14,GA,0,26,13,1,0,40 | |
| 97 A Fake phiX Sample,26,14,GC,1,26,13,1,0,40 | |
| 98 A Fake phiX Sample,26,14,TG,0,26,13,1,0,40 | |
| 99 A Fake phiX Sample,26,15,AC,1,26,14,1,0,40 | |
| 100 A Fake phiX Sample,26,15,CC,0,26,14,2,0,40 | |
| 101 A Fake phiX Sample,26,15,CG,0,26,14,1,0,40 | |
| 102 A Fake phiX Sample,26,15,CT,0,26,14,2,0,40 | |
| 103 A Fake phiX Sample,26,15,GA,0,26,14,1,0,40 | |
| 104 A Fake phiX Sample,26,15,GT,0,26,14,1,0,40 | |
| 105 A Fake phiX Sample,26,15,TG,0,26,14,2,0,40 | |
| 106 A Fake phiX Sample,26,16,AC,1,26,15,1,0,40 | |
| 107 A Fake phiX Sample,26,16,CC,0,26,15,1,0,40 | |
| 108 A Fake phiX Sample,26,16,CG,0,26,15,1,0,40 | |
| 109 A Fake phiX Sample,26,16,CT,0,26,15,1,0,40 | |
| 110 A Fake phiX Sample,26,16,GA,0,26,15,2,0,40 | |
| 111 A Fake phiX Sample,26,16,GT,0,26,15,1,0,40 | |
| 112 A Fake phiX Sample,26,16,TA,0,26,15,1,0,40 | |
| 113 A Fake phiX Sample,26,16,TG,0,26,15,2,0,40 | |
| 114 A Fake phiX Sample,26,17,AC,1,26,16,3,0,40 | |
| 115 A Fake phiX Sample,26,17,CC,0,26,16,1,0,40 | |
| 116 A Fake phiX Sample,26,17,CG,0,26,16,1,0,40 | |
| 117 A Fake phiX Sample,26,17,GA,0,26,16,2,0,40 | |
| 118 A Fake phiX Sample,26,17,GT,0,26,16,1,0,40 | |
| 119 A Fake phiX Sample,26,17,TA,0,26,16,1,0,40 | |
| 120 A Fake phiX Sample,26,17,TG,0,26,16,1,0,40 | |
| 121 A Fake phiX Sample,26,18,AC,1,26,17,3,0,40 | |
| 122 A Fake phiX Sample,26,18,CC,0,26,17,3,0,40 | |
| 123 A Fake phiX Sample,26,18,CG,0,26,17,1,0,40 | |
| 124 A Fake phiX Sample,26,18,GA,0,26,17,1,0,40 | |
| 125 A Fake phiX Sample,26,18,GT,0,26,17,1,0,40 | |
| 126 A Fake phiX Sample,26,18,TA,0,26,17,1,0,40 | |
| 127 A Fake phiX Sample,26,19,AC,1,26,18,2,0,40 | |
| 128 A Fake phiX Sample,26,19,CC,0,26,18,3,0,40 | |
| 129 A Fake phiX Sample,26,19,CG,0,26,18,3,0,40 | |
| 130 A Fake phiX Sample,26,19,GT,0,26,18,1,0,40 | |
| 131 A Fake phiX Sample,26,19,TA,0,26,18,1,0,40 | |
| 132 A Fake phiX Sample,26,20,AC,1,26,19,1,0,40 | |
| 133 A Fake phiX Sample,26,20,CC,0,26,19,2,0,40 | |
| 134 A Fake phiX Sample,26,20,CG,0,26,19,3,0,40 | |
| 135 A Fake phiX Sample,26,20,GA,0,26,19,1,0,40 | |
| 136 A Fake phiX Sample,26,20,GT,0,26,19,2,0,40 | |
| 137 A Fake phiX Sample,26,20,TA,0,26,19,1,0,40 | |
| 138 A Fake phiX Sample,26,21,AC,1,26,20,1,0,40 | |
| 139 A Fake phiX Sample,26,21,AG,1,26,20,1,0,40 | |
| 140 A Fake phiX Sample,26,21,CC,0,26,20,1,0,40 | |
| 141 A Fake phiX Sample,26,21,CG,0,26,20,2,0,40 | |
| 142 A Fake phiX Sample,26,21,GA,0,26,20,1,0,40 | |
| 143 A Fake phiX Sample,26,21,GT,0,26,20,2,0,40 | |
| 144 A Fake phiX Sample,26,21,TA,0,26,20,2,0,40 | |
| 145 A Fake phiX Sample,26,22,AC,1,26,21,2,0,40 | |
| 146 A Fake phiX Sample,26,22,AG,1,26,21,1,0,40 | |
| 147 A Fake phiX Sample,26,22,CC,0,26,21,1,0,40 | |
| 148 A Fake phiX Sample,26,22,CG,0,26,21,1,0,40 | |
| 149 A Fake phiX Sample,26,22,GA,0,26,21,1,0,40 | |
| 150 A Fake phiX Sample,26,22,GG,0,26,21,1,0,40 | |
| 151 A Fake phiX Sample,26,22,GT,0,26,21,1,0,40 | |
| 152 A Fake phiX Sample,26,22,TA,0,26,21,2,0,40 | |
| 153 A Fake phiX Sample,26,23,AC,1,26,22,2,0,40 | |
| 154 A Fake phiX Sample,26,23,AG,1,26,22,1,0,40 | |
| 155 A Fake phiX Sample,26,23,CC,0,26,22,2,0,40 | |
| 156 A Fake phiX Sample,26,23,CG,0,26,22,1,0,40 | |
| 157 A Fake phiX Sample,26,23,GA,0,26,22,1,0,40 | |
| 158 A Fake phiX Sample,26,23,GC,0,26,22,1,0,40 | |
| 159 A Fake phiX Sample,26,23,GG,0,26,22,1,0,40 | |
| 160 A Fake phiX Sample,26,23,TA,0,26,22,1,0,40 | |
| 161 A Fake phiX Sample,26,24,AC,1,26,23,1,0,40 | |
| 162 A Fake phiX Sample,26,24,AG,1,26,23,1,0,40 | |
| 163 A Fake phiX Sample,26,24,CC,0,26,23,2,0,40 | |
| 164 A Fake phiX Sample,26,24,CG,0,26,23,2,0,40 | |
| 165 A Fake phiX Sample,26,24,CT,0,26,23,1,0,40 | |
| 166 A Fake phiX Sample,26,24,GA,0,26,23,1,0,40 | |
| 167 A Fake phiX Sample,26,24,GC,0,26,23,1,0,40 | |
| 168 A Fake phiX Sample,26,24,GG,0,26,23,1,0,40 | |
| 169 A Fake phiX Sample,26,25,AG,1,26,24,1,0,40 | |
| 170 A Fake phiX Sample,26,25,CC,0,26,24,1,0,40 | |
| 171 A Fake phiX Sample,26,25,CG,0,26,24,2,0,40 | |
| 172 A Fake phiX Sample,26,25,CT,0,26,24,1,0,40 | |
| 173 A Fake phiX Sample,26,25,GA,0,26,24,2,0,40 | |
| 174 A Fake phiX Sample,26,25,GC,0,26,24,1,0,40 | |
| 175 A Fake phiX Sample,26,25,GG,0,26,24,1,0,40 | |
| 176 A Fake phiX Sample,26,25,TA,1,26,24,1,0,40 | |
| 177 A Fake phiX Sample,26,26,AG,1,26,25,2,0,40 | |
| 178 A Fake phiX Sample,26,26,CG,0,26,25,1,0,40 | |
| 179 A Fake phiX Sample,26,26,CT,0,26,25,1,0,40 | |
| 180 A Fake phiX Sample,26,26,GA,0,26,25,2,0,40 | |
| 181 A Fake phiX Sample,26,26,GC,0,26,25,1,0,40 | |
| 182 A Fake phiX Sample,26,26,GG,0,26,25,1,0,40 | |
| 183 A Fake phiX Sample,26,26,TA,1,26,25,1,0,40 | |
| 184 A Fake phiX Sample,26,27,AC,2,26,26,1,0,40 | |
| 185 A Fake phiX Sample,26,27,AG,1,26,26,2,0,40 | |
| 186 A Fake phiX Sample,26,27,CT,0,26,26,1,0,40 | |
| 187 A Fake phiX Sample,26,27,GA,0,26,26,1,0,40 | |
| 188 A Fake phiX Sample,26,27,GC,0,26,26,1,0,40 | |
| 189 A Fake phiX Sample,26,27,GG,0,26,26,2,0,40 | |
| 190 A Fake phiX Sample,26,27,TA,1,26,26,1,0,40 | |
| 191 A Fake phiX Sample,26,28,AC,2,26,27,1,0,40 | |
| 192 A Fake phiX Sample,26,28,AG,1,26,27,1,0,40 | |
| 193 A Fake phiX Sample,26,28,CC,1,26,27,1,0,40 | |
| 194 A Fake phiX Sample,26,28,CT,0,26,27,1,0,40 | |
| 195 A Fake phiX Sample,26,28,GC,0,26,27,2,0,40 | |
| 196 A Fake phiX Sample,26,28,GG,0,26,27,2,0,40 | |
| 197 A Fake phiX Sample,26,28,TA,1,26,27,1,0,40 | |
| 198 A Fake phiX Sample,26,29,AC,2,26,28,1,0,40 | |
| 199 A Fake phiX Sample,26,29,CC,1,26,28,1,0,40 | |
| 200 A Fake phiX Sample,26,29,CT,0,26,28,2,0,40 | |
| 201 A Fake phiX Sample,26,29,GC,0,26,28,2,0,40 | |
| 202 A Fake phiX Sample,26,29,GG,0,26,28,1,0,40 | |
| 203 A Fake phiX Sample,26,29,TA,1,26,28,1,0,40 | |
| 204 A Fake phiX Sample,26,30,AC,2,26,29,1,0,40 | |
| 205 A Fake phiX Sample,26,30,CC,1,26,29,1,0,40 | |
| 206 A Fake phiX Sample,26,30,CT,0,26,29,3,0,40 | |
| 207 A Fake phiX Sample,26,30,GC,0,26,29,1,0,40 | |
| 208 A Fake phiX Sample,26,30,TA,1,26,29,2,0,40 | |
| 209 A Fake phiX Sample,26,31,AC,2,26,30,1,0,40 | |
| 210 A Fake phiX Sample,26,31,CC,1,26,30,1,0,40 | |
| 211 A Fake phiX Sample,26,31,CT,0,26,30,2,0,40 | |
| 212 A Fake phiX Sample,26,31,TA,1,26,30,3,0,40 | |
| 213 A Fake phiX Sample,26,32,AA,0,26,31,1,0,40 | |
| 214 A Fake phiX Sample,26,32,AC,1,26,31,1,0,40 | |
| 215 A Fake phiX Sample,26,32,AC,2,26,31,1,0,40 | |
| 216 A Fake phiX Sample,26,32,CC,1,26,31,1,0,40 | |
| 217 A Fake phiX Sample,26,32,CT,0,26,31,1,0,40 | |
| 218 A Fake phiX Sample,26,32,TA,1,26,31,2,0,40 | |
| 219 A Fake phiX Sample,26,33,AA,0,26,32,1,0,40 | |
| 220 A Fake phiX Sample,26,33,AC,1,26,32,1,0,40 | |
| 221 A Fake phiX Sample,26,33,AC,2,26,32,1,0,40 | |
| 222 A Fake phiX Sample,26,33,AT,0,26,32,1,0,40 | |
| 223 A Fake phiX Sample,26,33,CC,1,26,32,1,0,40 | |
| 224 A Fake phiX Sample,26,33,CT,0,26,32,1,0,40 | |
| 225 A Fake phiX Sample,26,33,TA,1,26,32,1,0,40 | |
| 226 A Fake phiX Sample,26,34,AA,0,26,33,1,0,40 | |
| 227 A Fake phiX Sample,26,34,AC,1,26,33,1,0,40 | |
| 228 A Fake phiX Sample,26,34,AT,0,26,33,1,0,40 | |
| 229 A Fake phiX Sample,26,34,CC,1,26,33,1,0,40 | |
| 230 A Fake phiX Sample,26,34,CT,0,26,33,2,0,40 | |
| 231 A Fake phiX Sample,26,34,TA,1,26,33,1,0,40 | |
| 232 A Fake phiX Sample,26,34,TG,0,26,33,1,0,40 | |
| 233 A Fake phiX Sample,26,35,AA,0,26,34,1,0,40 | |
| 234 A Fake phiX Sample,26,35,AT,0,26,34,1,0,40 | |
| 235 A Fake phiX Sample,26,35,CT,0,26,34,2,0,40 | |
| 236 A Fake phiX Sample,26,35,GA,0,26,34,1,0,40 | |
| 237 A Fake phiX Sample,26,35,TA,1,26,34,2,0,40 | |
| 238 A Fake phiX Sample,26,35,TG,0,26,34,1,0,40 | |
| 239 A Fake phiX Sample,26,36,AA,0,26,35,2,0,40 | |
| 240 A Fake phiX Sample,26,36,AG,0,26,35,1,0,40 | |
| 241 A Fake phiX Sample,26,36,AT,0,26,35,1,0,40 | |
| 242 A Fake phiX Sample,26,36,CT,0,26,35,2,0,40 | |
| 243 A Fake phiX Sample,26,36,GA,0,26,35,1,0,40 | |
| 244 A Fake phiX Sample,26,36,TA,0,26,35,2,0,40 | |
| 245 A Fake phiX Sample,26,36,TG,0,26,35,1,0,40 | |
| 246 EOF |