Mercurial > repos > devteam > cuffcompare
diff test-data/cuffcompare_out7.txt @ 6:8e534225baa9 draft
Uploaded
| author | devteam |
|---|---|
| date | Fri, 19 Dec 2014 11:55:55 -0500 |
| parents | 9d35cf35634e |
| children | f648e5180e40 |
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--- a/test-data/cuffcompare_out7.txt Thu Jan 09 14:27:37 2014 -0500 +++ b/test-data/cuffcompare_out7.txt Fri Dec 19 11:55:55 2014 -0500 @@ -1,22 +1,22 @@ -# Cuffcompare v2.0.2 | Command line was: -#cuffcompare -o cc_output -r /Users/jeremy/projects/galaxy-central/database/files/002/dataset_2770.dat -R ./input1 ./input2 +# Cuffcompare v2.2.1 | Command line was: +#cuffcompare -o cc_output -r /tmp/tmpZ9KXPVfiles/000/dataset_3.dat -R -e 100 -d 100 ./input1 ./input2 # #= Summary for dataset: ./input1 : # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 1 in 1 loci (1 multi-exon) -# Corresponding super-loci: 1 +# Super-loci w/ reference transcripts: 1 #--------------------| Sn | Sp | fSn | fSp Base level: 2.2 2.3 - - Exon level: 0.0 0.0 0.0 0.0 - Intron level: 0.0 nan 0.0 nan -Intron chain level: 0.0 nan 0.0 nan + Intron level: 0.0 -nan 0.0 -nan +Intron chain level: 0.0 -nan 0.0 -nan Transcript level: 0.0 0.0 0.0 0.0 Locus level: 0.0 0.0 0.0 0.0 -Matching intron chains: 0 - Matching loci: 0 + Matching intron chains: 0 + Matching loci: 0 Missed exons: 2/3 ( 66.7%) Novel exons: 49/50 ( 98.0%)