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comparison cuffdiff_wrapper.xml @ 6:604fa75232a2 draft

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Convert tool to use $GALAXY_SLOTS if available.
author Nate Coraor <nate@bx.psu.edu>
date Thu, 16 Jan 2014 13:13:52 -0500
parents beab768feb92
children 8da0eade1f59
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5:63b3133e535b 6:604fa75232a2
7 <version_command>cuffdiff 2>&amp;1 | head -n 1</version_command> 7 <version_command>cuffdiff 2>&amp;1 | head -n 1</version_command>
8 <command> 8 <command>
9 cuffdiff 9 cuffdiff
10 --no-update-check 10 --no-update-check
11 --FDR=$fdr 11 --FDR=$fdr
12 --num-threads="4" 12 --num-threads="\${GALAXY_SLOTS:-4}"
13 --min-alignment-count=$min_alignment_count 13 --min-alignment-count=$min_alignment_count
14 --library-norm-method=$library_norm_method 14 --library-norm-method=$library_norm_method
15 --dispersion-method=$dispersion_method 15 --dispersion-method=$dispersion_method
16 16
17 ## Set advanced data parameters? 17 ## Set advanced data parameters?