# HG changeset patch
# User Nate Coraor <nate@bx.psu.edu>
# Date 1389896032 18000
# Node ID 604fa75232a295f24414771e833b7fe57bdc3119
# Parent  63b3133e535bac8f290a970b749c716da7db8320
Convert tool to use $GALAXY_SLOTS if available.

diff -r 63b3133e535b -r 604fa75232a2 cuffdiff_wrapper.xml
--- a/cuffdiff_wrapper.xml	Thu Jan 09 14:27:59 2014 -0500
+++ b/cuffdiff_wrapper.xml	Thu Jan 16 13:13:52 2014 -0500
@@ -9,7 +9,7 @@
         cuffdiff
             --no-update-check
             --FDR=$fdr
-            --num-threads="4"
+            --num-threads="\${GALAXY_SLOTS:-4}"
             --min-alignment-count=$min_alignment_count
             --library-norm-method=$library_norm_method
             --dispersion-method=$dispersion_method