comparison cufflinks_wrapper.xml @ 6:9aab29e159a7 draft

Convert tool to use $GALAXY_SLOTS if available.

5:fe6f99e3d7f4

    <version_command>cufflinks 2>&amp;1 | head -n 1</version_command>
    <command interpreter="python">
        cufflinks_wrapper.py 
            --input=$input
            --assembled-isoforms-output=$assembled_isoforms
            --num-threads="4"
            -I $max_intron_len
            -F $min_isoform_fraction
            -j $pre_mrna_fraction
            $effective_length_correction
            

6:9aab29e159a7

    <version_command>cufflinks 2>&amp;1 | head -n 1</version_command>
    <command interpreter="python">
        cufflinks_wrapper.py 
            --input=$input
            --assembled-isoforms-output=$assembled_isoforms
            --num-threads="\${GALAXY_SLOTS:-4}"
            -I $max_intron_len
            -F $min_isoform_fraction
            -j $pre_mrna_fraction
            $effective_length_correction