comparison cuff_macros.xml @ 11:e04dbae2abe0 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cufflinks commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5

10:83bec71c5c9f

      <requirement type="package" version="2.2.1">cufflinks</requirement>
      <yield />
    </requirements>
  </xml>

  <xml name="stdio">
    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />
        <regex match="Error" />
        <regex match="Exception" />
    </stdio>
  </xml>
  <xml name="condition_inputs">
    <!-- DEFAULT : use BAM/SAM files -->
    <conditional name="in_type">
        <param name="set_in_type" type="select" label="Input data type"
            help="CuffNorm supports either CXB (from cuffquant) or SAM/BAM input files. Mixing is not supported. Default: SAM/BAM">

11:e04dbae2abe0

      <requirement type="package" version="2.2.1">cufflinks</requirement>
      <yield />
    </requirements>
  </xml>

  <xml name="condition_inputs">
    <!-- DEFAULT : use BAM/SAM files -->
    <conditional name="in_type">
        <param name="set_in_type" type="select" label="Input data type"
            help="CuffNorm supports either CXB (from cuffquant) or SAM/BAM input files. Mixing is not supported. Default: SAM/BAM">