Mercurial > repos > devteam > cuffmerge
changeset 17:04adc9db1581 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffmerge commit 52b81aad3194e02a04ec09eea1aa0c1e9301e942
| author | iuc |
|---|---|
| date | Wed, 23 Oct 2024 22:12:19 +0000 |
| parents | 22cf48ad7b16 |
| children | |
| files | cuff_macros.xml cuffmerge_wrapper.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/cuff_macros.xml Sat Oct 05 11:16:16 2024 +0000 +++ b/cuff_macros.xml Wed Oct 23 22:12:19 2024 +0000 @@ -79,7 +79,7 @@ #end for ]]></token> <token name="@CUFFLINKS_GTF_INPUTS@"><![CDATA[ -## Inputs. +## Inputs. #for $i, $input_file in enumerate($inputs): 'input_$i' #end for
--- a/cuffmerge_wrapper.xml Sat Oct 05 11:16:16 2024 +0000 +++ b/cuffmerge_wrapper.xml Wed Oct 23 22:12:19 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="cuffmerge" name="Cuffmerge" version="@TOOL_VERSION@.4" profile="@PROFILE@"> +<tool id="cuffmerge" name="Cuffmerge" version="@TOOL_VERSION@.5" profile="@PROFILE@"> <description>merge together several Cufflinks assemblies</description> <macros> <import>cuff_macros.xml</import> @@ -7,7 +7,7 @@ <version_command>cuffmerge -v</version_command> <command detect_errors="aggressive"><![CDATA[ @CUFFLINKS_LINK_GTF_INPUTS@ - echo @CUFFLINKS_GTF_INPUTS@ | sed 's/\s\+/\n/' > assembly_GTF_list.txt && + echo @CUFFLINKS_GTF_INPUTS@ | sed 's/\s\+/\n/g' > assembly_GTF_list.txt && cuffmerge -o output --num-threads="\${GALAXY_SLOTS:-4}"