# HG changeset patch
# User devteam
# Date 1447263318 18000
# Node ID 7d4c2097aac528da4468ac4d88e1a7945522d745
# Parent  a26af05ac218468ba61daf9101f3eeca0b7b0ca4
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffnorm commit a1517c9d22029095120643bbe2c8fa53754dd2b7

diff -r a26af05ac218 -r 7d4c2097aac5 cuff_macros.xml
--- a/cuff_macros.xml	Fri Dec 19 12:00:45 2014 -0500
+++ b/cuff_macros.xml	Wed Nov 11 12:35:18 2015 -0500
@@ -10,8 +10,8 @@
     <stdio>
         <exit_code range="1:" />
         <exit_code range=":-1" />
-        <regex match="Error:" />
-        <regex match="Exception:" />
+        <regex match="Error" />
+        <regex match="Exception" />
     </stdio>
   </xml>
   <xml name="condition_inputs">
@@ -88,4 +88,4 @@
             #end for
   </token>
   <token name="@HAS_MULTIPLE_INPUTS@">getattr(inputs, "__len__", [].__len__)() >= 2</token>
-</macros>
\ No newline at end of file
+</macros>
diff -r a26af05ac218 -r 7d4c2097aac5 cuffnorm_wrapper.xml
--- a/cuffnorm_wrapper.xml	Fri Dec 19 12:00:45 2014 -0500
+++ b/cuffnorm_wrapper.xml	Wed Nov 11 12:35:18 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.0">
+<tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.1">
     <description>Create normalized expression levels</description>
     <expand macro="requirements" />
     <expand macro="stdio" />
@@ -92,7 +92,7 @@
             <filter>(include_read_group_files == 'Yes')</filter>
             <filter>(output_format == 'cuffdiff')</filter>
         </data>
-        <data format="text" name="read_groups_info" label="${tool.name} on ${on_string}: Read Groups" from_work_dir="read_groups.info" >
+        <data format="txt" name="read_groups_info" label="${tool.name} on ${on_string}: Read Groups" from_work_dir="read_groups.info" >
             <filter>(include_read_group_files == 'Yes')</filter>
             <filter>(output_format == 'cuffdiff')</filter>
         </data>