Mercurial > repos > devteam > cuffquant

diff cuffquant_wrapper.xml @ 4:679d93c99757 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffquant commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
author iuc
date Tue, 16 Jun 2020 13:01:50 -0400
parents 6dc45faebc1d
children 93148c05136f
line wrap: on
line diff
--- a/cuffquant_wrapper.xml	Sun Feb 19 12:09:41 2017 -0500
+++ b/cuffquant_wrapper.xml	Tue Jun 16 13:01:50 2020 -0400
@@ -5,7 +5,7 @@
       <import>cuff_macros.xml</import>
     </macros>
     <expand macro="requirements" />
-    <version_command>cuffquant 2>&amp;1 | head -n 1</version_command>
+    <version_command><![CDATA[cuffquant 2>&1 | head -n 1]]></version_command>
     <command detect_errors="aggressive"><![CDATA[
         cuffquant
             --no-update-check
@@ -211,7 +211,5 @@
   --mask-file (gff3/gtf)         Ignore all alignment within transcripts in this file
   --max-bundle-frags             Sets the maximum number of fragments a locus may have before being skipped. Skipped loci are listed in skipped.gtf.
     </help>
-    <citations>
-        <citation type="doi">10.1038/nbt.1621</citation>
-    </citations>
+    <expand macro="citations"/>
 </tool>