Mercurial > repos > devteam > data_manager_bowtie2_index_builder
comparison data_manager_conf.xml @ 1:9bf4eb559ed5 draft
planemo upload commit 4381f4022eca6f3c58ae1d01096795cd28c15062
| author | devteam |
|---|---|
| date | Mon, 10 Aug 2015 16:44:10 -0400 |
| parents | 9458af1ab90b |
| children | e87aeff2cf88 |
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| 0:9458af1ab90b | 1:9bf4eb559ed5 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <data_managers> | 2 <data_managers> |
| 3 | 3 |
| 4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.1"> | 4 <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2"> |
| 5 <data_table name="bowtie2_indexes"> | 5 <data_table name="bowtie2_indexes"> |
| 6 <output> | 6 <output> |
| 7 <column name="value" /> | 7 <column name="value" /> |
| 8 <column name="dbkey" /> | 8 <column name="dbkey" /> |
| 9 <column name="name" /> | 9 <column name="name" /> |
| 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> | 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> |
| 16 <value_translation type="function">abspath</value_translation> | 16 <value_translation type="function">abspath</value_translation> |
| 17 </column> | 17 </column> |
| 18 </output> | 18 </output> |
| 19 </data_table> | 19 </data_table> |
| 20 | |
| 21 <data_table name="tophat2_indexes"> | |
| 22 <output> | |
| 23 <column name="value" /> | |
| 24 <column name="dbkey" /> | |
| 25 <column name="name" /> | |
| 26 <column name="path" output_ref="out_file" > | |
| 27 <!-- no move, always happens as part of bowtie2 and uses that path --> | |
| 28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation> | |
| 29 <value_translation type="function">abspath</value_translation> | |
| 30 </column> | |
| 31 </output> | |
| 32 </data_table> | |
| 20 </data_manager> | 33 </data_manager> |
| 21 | 34 |
| 22 </data_managers> | 35 </data_managers> |