Mercurial > repos > devteam > data_manager_bowtie2_index_builder
comparison data_manager/bowtie2_index_builder.xml @ 2:e87aeff2cf88 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_bowtie2_index_builder commit c54b039220cc3d1767a424b6ae76852d40e67437
| author | devteam |
|---|---|
| date | Mon, 16 Nov 2015 15:20:08 -0500 |
| parents | 9bf4eb559ed5 |
| children | 83da94c0e4a6 |
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| 1:9bf4eb559ed5 | 2:e87aeff2cf88 |
|---|---|
| 1 <tool id="bowtie2_index_builder_data_manager" name="Bowtie2 index" tool_type="manage_data" version="0.0.2"> | 1 <tool id="bowtie2_index_builder_data_manager" name="Bowtie2 index" tool_type="manage_data" version="2.2.6"> |
| 2 <description>builder</description> | 2 <description>builder</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.2.4">bowtie2</requirement> | 4 <requirement type="package" version="2.2.6">bowtie2</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python">bowtie2_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bowtie2_indexes" ${tophat2}</command> | 6 <command interpreter="python">bowtie2_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bowtie2_indexes" ${tophat2}</command> |
| 7 <stdio> | 7 <stdio> |
| 8 <exit_code range=":-1" /> | 8 <exit_code range=":-1" /> |
| 9 <exit_code range="1:" /> | 9 <exit_code range="1:" /> |