Mercurial > repos > devteam > data_manager_bowtie2_index_builder

diff data_manager_conf.xml @ 1:9bf4eb559ed5 draft

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planemo upload commit 4381f4022eca6f3c58ae1d01096795cd28c15062
author devteam
date Mon, 10 Aug 2015 16:44:10 -0400
parents 9458af1ab90b
children e87aeff2cf88
line wrap: on
line diff
--- a/data_manager_conf.xml	Tue Apr 14 12:06:01 2015 -0400
+++ b/data_manager_conf.xml	Mon Aug 10 16:44:10 2015 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <data_managers>
 
-    <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.1">
+    <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2">
         <data_table name="bowtie2_indexes">
             <output>
                 <column name="value" />
@@ -17,6 +17,19 @@
                 </column>
             </output>
         </data_table>
+
+        <data_table name="tophat2_indexes">
+            <output>
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="path" output_ref="out_file" >
+                    <!-- no move, always happens as part of bowtie2 and uses that path -->
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie2_index/${value}/${path}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
     </data_manager>
-   
+
 </data_managers>