Mercurial > repos > devteam > data_manager_bowtie2_index_builder
diff data_manager/bowtie2_index_builder.xml @ 12:6754002631cd draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie2_index_builder commit e5971e34b23280f7c3d6291a03325b6dd47e3fdd
| author | iuc |
|---|---|
| date | Sat, 16 Aug 2025 14:35:19 +0000 |
| parents | 39865c64a4e1 |
| children |
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--- a/data_manager/bowtie2_index_builder.xml Thu Dec 05 06:48:52 2024 +0000 +++ b/data_manager/bowtie2_index_builder.xml Sat Aug 16 14:35:19 2025 +0000 @@ -2,7 +2,7 @@ <description>builder</description> <macros> <token name="@WRAPPER_VERSION@">2.5.4</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">bowtie2</requirement> @@ -14,6 +14,7 @@ ln -s '${all_fasta_source.fields.path}' '${out_file.extra_files_path}/${fasta_file_name}' && cd '${out_file.extra_files_path}' && bowtie2-build --threads \${GALAXY_SLOTS:-1} '${out_file.extra_files_path}/${fasta_file_name}' '${value}' && + rm '${out_file.extra_files_path}/${fasta_file_name}' && cp '$dmjson' '$out_file' ]]></command> <configfiles> @@ -28,7 +29,7 @@ "value": "${value}", "dbkey": "${all_fasta_source.fields.dbkey}", "name": "${name}", - "path": "${fasta_file_name}" + "path": "${value}" } #if $tophat2: ], @@ -37,7 +38,7 @@ "value": "${value}", "dbkey": "${all_fasta_source.fields.dbkey}", "name": "${name}", - "path": "${fasta_file_name}" + "path": "${value}" } #end if ]