Mercurial > repos > devteam > data_manager_bwa_index_builder
comparison data_manager/bwa_index_builder.xml @ 1:cc5ae94acf01 draft default tip
planemo upload commit 2b9ef766ea9ee24964464363a9d41faeefa3d360-dirty
| author | devteam |
|---|---|
| date | Wed, 26 Aug 2015 11:50:48 -0400 |
| parents | 367878cb3698 |
| children |
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| 0:367878cb3698 | 1:cc5ae94acf01 |
|---|---|
| 2 <description>builder</description> | 2 <description>builder</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.5.9">bwa</requirement> | 4 <requirement type="package" version="0.5.9">bwa</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python">bwa_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_indexes"</command> | 6 <command interpreter="python">bwa_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_indexes"</command> |
| 7 <stdio> | |
| 8 <exit_code range=":-1" /> | |
| 9 <exit_code range="1:" /> | |
| 10 </stdio> | |
| 7 <inputs> | 11 <inputs> |
| 8 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> | 12 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> |
| 9 <options from_data_table="all_fasta"/> | 13 <options from_data_table="all_fasta"/> |
| 10 </param> | 14 </param> |
| 11 <param type="text" name="sequence_name" value="" label="Name of sequence" /> | 15 <param type="text" name="sequence_name" value="" label="Name of sequence" /> |