Mercurial > repos > devteam > data_manager_bwa_index_builder

diff data_manager/bwa_index_builder.xml @ 1:cc5ae94acf01 draft default tip

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planemo upload commit 2b9ef766ea9ee24964464363a9d41faeefa3d360-dirty
author devteam
date Wed, 26 Aug 2015 11:50:48 -0400
parents 367878cb3698
children
line wrap: on
line diff
--- a/data_manager/bwa_index_builder.xml	Fri Mar 28 14:18:43 2014 -0400
+++ b/data_manager/bwa_index_builder.xml	Wed Aug 26 11:50:48 2015 -0400
@@ -4,6 +4,10 @@
         <requirement type="package" version="0.5.9">bwa</requirement>
     </requirements>
     <command interpreter="python">bwa_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_indexes"</command>
+    <stdio>
+        <exit_code range=":-1" />
+        <exit_code range="1:" />
+    </stdio>
     <inputs>
         <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
             <options from_data_table="all_fasta"/>