Mercurial > repos > devteam > data_manager_bwa_mem_index_builder
comparison data_manager/bwa_mem_index_builder.xml @ 3:e519769cdb9c draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_bwa_mem_index_builder commit 288dad99ded81373bbbd89dbe4791373a8acecfd
| author | devteam |
|---|---|
| date | Tue, 26 Apr 2016 11:01:10 -0400 |
| parents | 36447bb36384 |
| children | 414a92a973fa |
comparison
equal
deleted
inserted
replaced
| 2:cb0147ade868 | 3:e519769cdb9c |
|---|---|
| 1 <tool id="bwa_mem_index_builder_data_manager" name="BWA-MEM index" tool_type="manage_data" version="0.0.1"> | 1 <tool id="bwa_mem_index_builder_data_manager" name="BWA-MEM index" tool_type="manage_data" version="0.0.2"> |
| 2 <description>builder</description> | 2 <description>builder</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.7.10.039ea20639">bwa</requirement> | 4 <requirement type="package" version="0.7.12">bwa</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python">bwa_mem_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_mem_indexes"</command> | 6 <command interpreter="python">bwa_mem_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bwa_mem_indexes"</command> |
| 7 <stdio> | 7 <stdio> |
| 8 <exit_code range=":-1" /> | 8 <exit_code range=":-1" /> |
| 9 <exit_code range="1:" /> | 9 <exit_code range="1:" /> |