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view data_manager_conf.xml @ 0:36447bb36384 draft

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author devteam
date Wed, 18 Mar 2015 15:18:49 -0400
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children 414a92a973fa
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<?xml version="1.0"?>
<data_managers>

    <data_manager tool_file="data_manager/bwa_mem_index_builder.xml" id="bwa_mem_index_builder" version="0.0.1">
        <data_table name="bwa_mem_indexes">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="out_file" >
                    <move type="directory" relativize_symlinks="True">
                        <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_mem_index/${value}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_mem_index/${value}/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
   
</data_managers>