Mercurial > repos > devteam > data_manager_fetch_genome_dbkeys_all_fasta
comparison data_manager/data_manager_fetch_genome_all_fasta_dbkeys.xml @ 8:14eb0fc65c62 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit b56485a8b386fc6f17219850e30e5656c159f231"
| author | iuc |
|---|---|
| date | Wed, 16 Oct 2019 04:17:00 -0400 |
| parents | 16ab4dd6a0e5 |
| children | 4d3eff1bc421 |
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| 7:b1bc53e9bbc5 | 8:14eb0fc65c62 |
|---|---|
| 1 <tool id="data_manager_fetch_genome_all_fasta_dbkey" name="Create DBKey and Reference Genome" version="0.0.2" tool_type="manage_data"> | 1 <tool id="data_manager_fetch_genome_all_fasta_dbkey" name="Create DBKey and Reference Genome" version="0.0.3" tool_type="manage_data"> |
| 2 <description>fetching</description> | 2 <description>fetching</description> |
| 3 <command detect_errors="exit_code"><![CDATA[ | 3 <command detect_errors="exit_code"><![CDATA[ |
| 4 python '$__tool_directory__/data_manager_fetch_genome_all_fasta_dbkeys.py' | 4 python '$__tool_directory__/data_manager_fetch_genome_all_fasta_dbkeys.py' |
| 5 '${out_file}' | 5 '${out_file}' |
| 6 #if str( $dbkey_source.dbkey_source_selector ) == 'existing': | 6 #if str( $dbkey_source.dbkey_source_selector ) == 'existing': |
| 76 <data name="out_file" format="data_manager_json"/> | 76 <data name="out_file" format="data_manager_json"/> |
| 77 </outputs> | 77 </outputs> |
| 78 <tests> | 78 <tests> |
| 79 <!-- TODO: need some way to test that new entry was added to data table --> | 79 <!-- TODO: need some way to test that new entry was added to data table --> |
| 80 <test> | 80 <test> |
| 81 <param name="dbkey" value="anoGam1"/> | 81 <param name="dbkey" value="phiX174"/> |
| 82 <param name="sequence_name" value=""/> | 82 <param name="dbkey_source|dbkey_source_selector" value="new"/> |
| 83 <param name="sequence_id" value=""/> | 83 <param name="sequence_name" value="phiX174 sequence name"/> |
| 84 <param name="sequence_id" value="phix174"/> | |
| 84 <param name="reference_source_selector" value="history"/> | 85 <param name="reference_source_selector" value="history"/> |
| 85 <param name="input_fasta" value="phiX174.fasta"/> | 86 <param name="input_fasta" value="phiX174.fasta"/> |
| 86 <param name="sort_selector" value="as_is"/> | 87 <param name="sort_selector" value="as_is"/> |
| 87 <output name="out_file" file="phiX174.data_manager_json"/> | 88 <output name="out_file" file="phiX174.data_manager_json"/> |
| 88 </test> | 89 </test> |