Mercurial > repos > devteam > data_manager_fetch_genome_dbkeys_all_fasta

comparison data_manager/data_manager_fetch_genome_all_fasta_dbkeys.py @ 1:bca4c608408c draft

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author devteam
date Tue, 03 Feb 2015 10:45:41 -0500
parents c669787306ae
children 86fa71e9b427
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0:c669787306ae 1:bca4c608408c
183 email = params['param_dict']['__user_email__'] 183 email = params['param_dict']['__user_email__']
184 if not email: 184 if not email:
185 email = 'anonymous@example.com' 185 email = 'anonymous@example.com'
186 186
187 ucsc_dbkey = params['param_dict']['reference_source']['requested_dbkey'] or dbkey 187 ucsc_dbkey = params['param_dict']['reference_source']['requested_dbkey'] or dbkey
188 UCSC_CHROM_FA_FILENAMES = [ '%s.chromFa' % ucsc_dbkey, 'chromFa' ] 188 UCSC_CHROM_FA_FILENAMES = [ '%s.chromFa' % ucsc_dbkey, 'chromFa', ucsc_dbkey ]
189 189
190 ftp = FTP( UCSC_FTP_SERVER ) 190 ftp = FTP( UCSC_FTP_SERVER )
191 ftp.login( 'anonymous', email ) 191 ftp.login( 'anonymous', email )
192 192
193 ucsc_path = UCSC_DOWNLOAD_PATH % ucsc_dbkey 193 ucsc_path = UCSC_DOWNLOAD_PATH % ucsc_dbkey