Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy
annotate data_manager_conf.xml @ 7:34a5799a65fa draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit a54e50916ebdb0858b049cdc549a43df801e1a71
author | iuc |
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date | Tue, 21 May 2024 07:36:09 +0000 |
parents | 6dd9e00dea95 |
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fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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1 <?xml version="1.0"?> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
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2 <data_managers> |
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6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
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3 <data_manager tool_file="data_manager/ncbi_taxonomy_fetcher.xml" id="ncbi_taxonomy_fetcher" version="1.0.3"> |
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fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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4 <data_table name="ncbi_taxonomy"> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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5 <output> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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6 <column name="value" /> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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7 <column name="name" /> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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8 <column name="path" output_ref="out_file"> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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changeset
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9 <move type="directory" relativize_symlinks="True"> |
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6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
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10 <source>${path}/taxonomy</source> |
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fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ncbi_taxonomy/${value}</target> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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12 </move> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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changeset
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ncbi_taxonomy/${value}</value_translation> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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14 <value_translation type="function">abspath</value_translation> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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15 </column> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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changeset
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16 </output> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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changeset
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17 </data_table> |
6
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
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18 <data_table name="ncbi_accession2taxid"> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
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changeset
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19 <output> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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20 <column name="value" /> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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21 <column name="name" /> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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22 <column name="path" output_ref="out_file"> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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23 <move type="directory" relativize_symlinks="True"> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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24 <source>${path}/accession2taxid</source> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ncbi_accession2taxid/${value}</target> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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26 </move> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ncbi_accession2taxid/${value}</value_translation> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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28 <value_translation type="function">abspath</value_translation> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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29 </column> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
0
diff
changeset
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30 </output> |
6dd9e00dea95
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 3d78021971b83d585c432830cee0488ada7bd257"
iuc
parents:
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diff
changeset
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31 </data_table> |
0
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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32 </data_manager> |
fafcd2f5db36
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
devteam
parents:
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33 </data_managers> |