Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy
comparison data_manager/ncbi_taxonomy_fetcher.xml @ 7:34a5799a65fa draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit a54e50916ebdb0858b049cdc549a43df801e1a71
| author | iuc |
|---|---|
| date | Tue, 21 May 2024 07:36:09 +0000 |
| parents | 6dd9e00dea95 |
| children |
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| 6:6dd9e00dea95 | 7:34a5799a65fa |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.3"> | 2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.4" profile="23.0"> |
| 3 <description>taxonomy downloader</description> | 3 <description>taxonomy downloader</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="3.7">python</requirement> | 5 <requirement type="package" version="3.7">python</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <command detect_errors="exit_code"> | 7 <command detect_errors="exit_code"> |
| 27 <data name="out_file" format="data_manager_json" /> | 27 <data name="out_file" format="data_manager_json" /> |
| 28 </outputs> | 28 </outputs> |
| 29 <tests> | 29 <tests> |
| 30 <test> | 30 <test> |
| 31 <param name="database_name" value="tax_name"/> | 31 <param name="database_name" value="tax_name"/> |
| 32 <param name="database_id" value="tax_id"/> | |
| 33 <output name="out_file" value="taxonomy.json"/> | 32 <output name="out_file" value="taxonomy.json"/> |
| 34 </test> | 33 </test> |
| 35 <test> | 34 <test> |
| 36 <param name="database_name" value="tax_name"/> | 35 <param name="database_name" value="tax_name"/> |
| 37 <param name="database_id" value="tax_id"/> | |
| 38 <param name="name_maps" value="true"/> | 36 <param name="name_maps" value="true"/> |
| 39 <param name="partial_data" value="--partial"/> | 37 <param name="partial_data" value="--partial"/> |
| 40 <output name="out_file" value="taxonomy_with_accession2taxid.json"/> | 38 <output name="out_file" value="taxonomy_with_accession2taxid.json"/> |
| 41 </test> | 39 </test> |
| 42 </tests> | 40 </tests> |