# HG changeset patch
# User devteam
# Date 1431119198 14400
# Node ID 700f2df51eb0bb87efddf49cc2bc20a6d7aeb213
# Parent  a15709ad26ea130a9b8814cab74767f8f741da53
planemo upload commit 7d9b478cd03f31705266596fe4c168e719c672b6

diff -r a15709ad26ea -r 700f2df51eb0 data_manager/data_manager_gatk_picard_index_builder.xml
--- a/data_manager/data_manager_gatk_picard_index_builder.xml	Mon Sep 15 21:47:46 2014 -0400
+++ b/data_manager/data_manager_gatk_picard_index_builder.xml	Fri May 08 17:06:38 2015 -0400
@@ -5,11 +5,11 @@
         <requirement type="package" version="1.56.0">picard</requirement>
     </requirements>
     <command interpreter="python">
-        data_manager_gatk_picard_index_builder.py "${out_file}" \
-            --jar "\$JAVA_JAR_PATH/CreateSequenceDictionary.jar" \
-            --fasta_filename "${all_fasta_source.fields.path}" \
-            --fasta_dbkey "${all_fasta_source.fields.dbkey}" \
-            --fasta_description "${all_fasta_source.fields.name}" \
+        data_manager_gatk_picard_index_builder.py "${out_file}"
+            --jar "\$JAVA_JAR_PATH/CreateSequenceDictionary.jar"
+            --fasta_filename "${all_fasta_source.fields.path}"
+            --fasta_dbkey "${all_fasta_source.fields.dbkey}"
+            --fasta_description "${all_fasta_source.fields.name}"
             --data_table_name "gatk_picard_indexes"
     </command>
     <inputs>
diff -r a15709ad26ea -r 700f2df51eb0 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Sep 15 21:47:46 2014 -0400
+++ b/tool_dependencies.xml	Fri May 08 17:06:38 2015 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="picard" version="1.56.0">
-      <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="99a28567c3a3" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="samtools" version="0.1.18">
       <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />