view tool-data/picard_index.loc.sample @ 2:b99040168706 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 59ee07d9786f1a090053b4a13192247872389d61
author iuc
date Mon, 10 Apr 2017 06:06:23 -0400
parents 00491eabe22b
children
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#This is a sample file distributed with Galaxy that enables tools
#to use a directory of Picard dict and associated files. You will need
#to create these data files and then create a picard_index.loc file 
#similar to this one (store it in this directory) that points to 
#the directories in which those files are stored. The picard_index.loc 
#file has this format (longer white space is the TAB character):
#
#<unique_build_id>		<dbkey>		<display_name>		<fasta_file_path>
#
#So, for example, if you had hg18 indexed and stored in 
#/depot/data2/galaxy/srma/hg18/, 
#then the srma_index.loc entry would look like this:
#
#hg18	hg18	hg18 Pretty		/depot/data2/galaxy/picard/hg18/hg18.fa
#
#and your /depot/data2/galaxy/srma/hg18/ directory
#would contain the following three files:
#hg18.fa
#hg18.dict
#hg18.fa.fai
#
#The dictionary file for each reference (ex. hg18.dict) must be 
#created via Picard (http://picard.sourceforge.net). Note that
#the dict file does not have the .fa extension although the
#path list in the loc file does include it.
#