Mercurial > repos > devteam > data_manager_rsync_g2

diff data_manager/data_manager_rsync.xml @ 1:8ff92bd7e2a3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_rsync_g2 commit 8652f36a3a3838dca989426961561e81432acf4f
author iuc
date Tue, 04 Apr 2017 18:13:26 -0400
parents 0a3a6f862104
children e0329ab30f6d
line wrap: on
line diff
--- a/data_manager/data_manager_rsync.xml	Wed Oct 14 13:48:12 2015 -0400
+++ b/data_manager/data_manager_rsync.xml	Tue Apr 04 18:13:26 2017 -0400
@@ -1,23 +1,18 @@
 <tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.1" tool_type="manage_data">
     <options sanitize="False" />
     <description>fetching</description>
-    <command interpreter="python">data_manager_rsync.py "${out_file}"</command>
-    <stdio>
-        <exit_code range="1:" err_level="fatal" />
-        <exit_code range=":-1" err_level="fatal" />
-    </stdio>
+    <command detect_errors="exit_code"><![CDATA[
+        python '$__tool_directory__/data_manager_rsync.py'
+        '${out_file}'
+    ]]></command>
     <inputs>
-        
         <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all"/>
 
-        <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" 
-        label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )"
-        refresh_on_change="dbkey"/>
-        
-        
-        <param name="data_table_entries" type="select" display="checkboxes" multiple="True" optional="False" 
-        label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )"
-        refresh_on_change="dbkey"/>
+        <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" refresh_on_change="dbkey"
+            label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" />
+
+        <param name="data_table_entries" type="select" display="checkboxes" multiple="true" optional="false" refresh_on_change="dbkey"
+            label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )" />
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json" dbkey="dbkey"/>
@@ -37,12 +32,9 @@
 
 ------
 
-
-
 .. class:: infomark
 
-**Notice:** If you do not have a particular data table defined, then it will be created and persisted dynamically. 
-
+**Notice:** If you do not have a particular data table defined, then it will be created and persisted dynamically.
     </help>
     <code file="data_manager_rsync.py" />
 </tool>