comparison data_manager/data_manager_sam_fasta_index_builder.py @ 7:3e4d45aca422 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sam_fasta_index_builder commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"

6:f8418a1bf7d0

    parser.add_option('-n', '--data_table_name', dest='data_table_name', action='store', type="string", default=None, help='data_table_name')
    (options, args) = parser.parse_args()

    filename = args[0]

    params = json.loads(open(filename).read())
    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    data_manager_dict = {}

    if options.fasta_dbkey in [None, '', '?']:

        sequence_name,
        data_table_name=options.data_table_name or DEFAULT_DATA_TABLE_NAME
    )

    # save info to json file
    open(filename, 'w').write(json.dumps(data_manager_dict, sort_keys=True))


if __name__ == "__main__":
    main()

7:3e4d45aca422

    parser.add_option('-n', '--data_table_name', dest='data_table_name', action='store', type="string", default=None, help='data_table_name')
    (options, args) = parser.parse_args()

    filename = args[0]

    with open(filename) as fh:
        params = json.load(fh)
    target_directory = params['output_data'][0]['extra_files_path']
    os.mkdir(target_directory)
    data_manager_dict = {}

    if options.fasta_dbkey in [None, '', '?']:

        sequence_name,
        data_table_name=options.data_table_name or DEFAULT_DATA_TABLE_NAME
    )

    # save info to json file
    with open(filename, 'w') as fh:
        json.dump(data_manager_dict, fh, sort_keys=True)


if __name__ == "__main__":
    main()