# HG changeset patch
# User devteam
# Date 1440609757 14400
# Node ID 2a1ac1abc3f75cf9b9d5e04468cfe556c09fe7b5
# Parent  cf875cbe2df4c791cb35a8bcee475bb2646092e4
planemo upload commit 5ad726dc73203a704666033cd3bf70b82575978f

diff -r cf875cbe2df4 -r 2a1ac1abc3f7 data_manager/data_manager_sam_fasta_index_builder.py
--- a/data_manager/data_manager_sam_fasta_index_builder.py	Thu Mar 27 15:08:42 2014 -0400
+++ b/data_manager/data_manager_sam_fasta_index_builder.py	Wed Aug 26 13:22:37 2015 -0400
@@ -27,6 +27,7 @@
 
 def build_sam_index( data_manager_dict, fasta_filename, target_directory, dbkey, sequence_id, sequence_name, data_table_name=DEFAULT_DATA_TABLE_NAME ):
     #TODO: allow multiple FASTA input files
+    assert os.path.exists( fasta_filename ), 'FASTA file "%s" is missing, cannot build samtools index.' % fasta_filename
     fasta_base_name = os.path.split( fasta_filename )[-1]
     sym_linked_fasta_filename = os.path.join( target_directory, fasta_base_name )
     os.symlink( fasta_filename, sym_linked_fasta_filename )
diff -r cf875cbe2df4 -r 2a1ac1abc3f7 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Mar 27 15:08:42 2014 -0400
+++ b/tool_dependencies.xml	Wed Aug 26 13:22:37 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>