Mercurial > repos > devteam > data_manager_twobit_builder
annotate tool-data/twobit.loc.sample @ 7:94a50db37d1a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author | iuc |
---|---|
date | Sun, 16 Apr 2023 08:31:43 +0000 |
parents | 74b09c8e5f6e |
children |
rev | line source |
---|---|
0
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
1 #This is a sample file distributed with Galaxy that is used by some |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
2 #tools. The twobit.loc file has this format (white space characters |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
3 #are TAB characters): |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
4 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
5 #<Build> <FullPathToFile> |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
6 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
7 #So, for example, if you had droPer1 twobit files stored in |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
8 #/depot/data2/galaxy/droPer1/, then the twobit.loc entry |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
9 #would look like this: |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
10 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
11 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
12 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
13 #and your /depot/data2/galaxy/droPer1/ directory would |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
14 #contain all of your twobit files (e.g.): |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
15 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
16 #-rw-rw-r-- 1 nate galaxy 48972650 2007-05-04 11:27 droPer1.2bit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
17 #...etc... |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
18 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
19 #Your twobit.loc file should include an entry per line for each twobit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
20 #file you have stored. For example: |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
21 # |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
22 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
23 #apiMel2 /depot/data2/galaxy/apiMel2/apiMel2.2bit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
24 #droAna1 /depot/data2/galaxy/droAna1/droAna1.2bit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
25 #droAna2 /depot/data2/galaxy/droAna2/droAna2.2bit |
74b09c8e5f6e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff
changeset
|
26 #...etc... |