Mercurial > repos > devteam > data_manager_twobit_builder

comparison data_manager/twobit_builder.xml @ 4:16c0c73b28ad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 15:49:13 -0500
parents 5c77d4091880
children 62359a151521
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3:5c77d4091880 4:16c0c73b28ad
1 <tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.3"> 1 <tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.4" profile="19.05">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="377">ucsc-fatotwobit</requirement> 3 <requirement type="package" version="377">ucsc-fatotwobit</requirement>
4 <requirement type="package" version="3.7">python</requirement>
4 </requirements> 5 </requirements>
5 <description>builder</description> 6 <description>builder</description>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/twobit_builder.py' 8 python '$__tool_directory__/twobit_builder.py'
8 '${out_file}' 9 '${out_file}'
9 --fasta_filename '${all_fasta_source.fields.path}' 10 --fasta_filename '${all_fasta_source.fields.path}'
10 --fasta_dbkey '${all_fasta_source.fields.dbkey}' 11 --fasta_dbkey '${all_fasta_source.fields.dbkey}'
11 --fasta_description '${all_fasta_source.fields.name}' 12 --fasta_description '${all_fasta_source.fields.name}'
12 ]]></command> 13 ]]></command>
13 <inputs> 14 <inputs>
14 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> 15 <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
15 <options from_data_table="all_fasta"/> 16 <options from_data_table="all_fasta"/>
16 </param> 17 </param>