diff data_manager/twobit_builder.xml @ 0:74b09c8e5f6e draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/twobit_builder.xml	Thu Jun 11 16:14:27 2015 -0400
@@ -0,0 +1,35 @@
+<tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.1">
+    <requirements>
+        <requirement type="package" version="312">ucsc_tools</requirement>
+    </requirements>
+    <description>builder</description>
+    <command interpreter="python">twobit_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}"</command>
+    <inputs>
+        <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
+            <options from_data_table="all_fasta"/>
+        </param>
+        <param type="text" name="sequence_name" value="" label="Name of sequence" />
+        <param type="text" name="sequence_id" value="" label="ID for sequence" />
+        
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json"/>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="all_fasta_source" value="sacCer2"/>
+            <param name="sequence_name" value=""/>
+            <output name="sequence_id" file="data_manager_two_bit_out_1.dat"/>
+        </test>
+    </tests>
+
+    <help>
+
+.. class:: infomark
+
+**Notice:** If you leave name, description, or id blank, it will be generated automatically. 
+
+    </help>
+</tool>
+