Mercurial > repos > devteam > dwt_cor_avb_all
diff execute_dwt_cor_aVb_all.xml @ 2:e01e8a9a82f4 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_cor_avb_all commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author | devteam |
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date | Mon, 06 Jul 2020 20:31:38 -0400 |
parents | 8564f6927b87 |
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--- a/execute_dwt_cor_aVb_all.xml Tue Jun 03 14:25:07 2014 -0400 +++ b/execute_dwt_cor_aVb_all.xml Mon Jul 06 20:31:38 2020 -0400 @@ -1,20 +1,35 @@ -<tool id="compute_p-values_correlation_coefficients_featureA_featureB_occurrences_between_two_datasets_using_discrete_wavelet_transfom" name="Compute P-values and Correlation Coefficients for Occurrences of Two Set of Features" version="1.0.0"> +<tool id="compute_p-values_correlation_coefficients_featureA_featureB_occurrences_between_two_datasets_using_discrete_wavelet_transfom" name="Compute P-values and Correlation Coefficients for Occurrences of Two Set of Features" version="1.0.1"> <description>between two datasets using Discrete Wavelet Transfoms</description> - - <command interpreter="perl"> - execute_dwt_cor_aVb_all.pl $inputFile1 $inputFile2 $outputFile1 $outputFile2 + <requirements> + <requirement type="package" version="1.7.5">r-waveslim</requirement> + <requirement type="package" version="4.6.8">r-wavethresh</requirement> + </requirements> + <command detect_errors="exit_code"> + Rscript --vanilla '$__tool_directory__/execute_dwt_cor_aVb_all.R' + '$inputFile1' + '$inputFile2' + '$outputFile2' + '$outputFile1' </command> - <inputs> - <param format="tabular" name="inputFile1" type="data" label="Select the first input file"/> - <param format="tabular" name="inputFile2" type="data" label="Select the second input file"/> + <param format="tabular" name="inputFile1" type="data" label="Select the first input file"/> + <param format="tabular" name="inputFile2" type="data" label="Select the second input file"/> </inputs> - <outputs> - <data format="tabular" name="outputFile1"/> - <data format="pdf" name="outputFile2"/> + <data format="tabular" name="outputFile1" label="${tool.name} on ${on_string}: statistics"/> + <data format="pdf" name="outputFile2" label="${tool.name} on ${on_string}: pdf"/> </outputs> - + <tests> + <test> + <param ftype="tabular" name="inputFile1" value="in1.tsv"/> + <param ftype="tabular" name="inputFile2" value="in2.tsv"/> + <output name="outputFile1" ftype="tabular"> + <assert_contents><has_line_matching expression="^motif1\tmotif2.*"/></assert_contents> + <assert_contents><has_line_matching expression="^topoisomeraseCleavageSite\ttranslinTarget.*" /></assert_contents> + </output> + <output name="outputFile2" ftype="pdf" file="out2.pdf" compare="sim_size"/> + </test> + </tests> <help> .. class:: infomark