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comparison execute_dwt_var_perFeature.xml @ 2:7a15159140d1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_var_perfeature commit a684fffd461eea5ec33fe806fd2b6052c4321dcc
author devteam
date Tue, 14 Aug 2018 10:32:11 -0400
parents cb1c59d69557
children 6c29c7e347e8
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1:cb1c59d69557 2:7a15159140d1
1 <tool id="dwt_var1" name="Wavelet variance" version="1.0.0"> 1 <tool id="dwt_var1" name="Wavelet variance" version="1.0.1">
2 <description>using Discrete Wavelet Transfoms</description> 2 <description>using Discrete Wavelet Transfoms</description>
3 3 <requirements>
4 <command interpreter="perl"> 4 <requirement type="package" version="5.26.2.1">perl</requirement>
5 execute_dwt_var_perFeature.pl $inputFile $feature $alpha $outputFile1 $outputFile2 5 <requirement type="package" version="3.4.1">r-base</requirement>
6 </command> 6 <requirement type="package" version="1.0_6">r-bitops</requirement>
7 7 <requirement type="package" version="1.7.5">r-waveslim</requirement>
8 <inputs> 8 <requirement type="package" version="4.6.8">r-wavethresh</requirement>
9 <param format="tabular" name="inputFile" type="data" label="Select data"/> 9 <requirement type="package" version="2.4_5">r-rwave</requirement>
10 <param name="feature" label="Feature column" type="data_column" data_ref="inputFile" multiple="true" help="Please select at least one column"/> 10 </requirements>
11 <param name="alpha" type="float" value="0.05" label="alpha (significance level)" /> 11 <command>
12 </inputs> 12 perl '$__tool_directory__/execute_dwt_var_perFeature.pl'
13 13 '$inputFile'
14 <outputs> 14 $feature
15 <data format="tabular" name="outputFile1"/> 15 $alpha
16 <data format="pdf" name="outputFile2"/> 16 '$outputFile1'
17 </outputs> 17 '$outputFile2'
18 <tests> 18 </command>
19 <test> 19 <inputs>
20 <param name="inputFile" value="dwt_var_in.interval"/> 20 <param format="tabular" name="inputFile" type="data" label="Select data"/>
21 <param name="feature" value="4"/> 21 <param name="feature" label="Feature column" type="data_column" data_ref="inputFile" multiple="true"
22 <param name="alpha" value="0.05"/> 22 help="Please select at least one column"/>
23 <output name="outputFile1" file="dwt_var_out1.tabular" compare="re_match"/> 23 <param name="alpha" type="float" value="0.05" label="alpha (significance level)" />
24 <output name="outputFile2" file="dwt_var_out2.pdf" compare="sim_size"/> 24 </inputs>
25 </test> 25 <outputs>
26 </tests> 26 <data format="tabular" name="outputFile1"/>
27 27 <data format="pdf" name="outputFile2"/>
28 <help> 28 </outputs>
29 <tests>
30 <test>
31 <param name="inputFile" value="dwt_var_in.interval"/>
32 <param name="feature" value="4"/>
33 <param name="alpha" value="0.05"/>
34 <output name="outputFile1" file="dwt_var_out1.tabular" compare="re_match"/>
35 <output name="outputFile2" file="dwt_var_out2.pdf" compare="sim_size"/>
36 </test>
37 </tests>
38 <help>
29 39
30 .. class:: infomark 40 .. class:: infomark
31 41
32 **What it does** 42 **What it does**
33 43
45 .. class:: warningmark 55 .. class:: warningmark
46 56
47 **Note** 57 **Note**
48 In order to obtain empirical p-values, a random perumtation scheme is implemented by the tool, such that the output may generate slightly variations in results each time it is run on the same input file. 58 In order to obtain empirical p-values, a random perumtation scheme is implemented by the tool, such that the output may generate slightly variations in results each time it is run on the same input file.
49 59
50 ----- 60 </help>
51
52
53 **Example**
54
55 </help>
56
57 </tool> 61 </tool>