annotate emboss_wordcount.xml @ 18:63dd26468588 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 18de4aa9ba00124b1b3e3afe14219e46931e58a9"
author iuc
date Fri, 09 Jul 2021 18:36:34 +0000
parents 8992d258e42f
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8992d258e42f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9844cae766e7471d9fa6b2e8356e5194e77f6753
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1 <tool id="EMBOSS: wordcount109" name="wordcount" version="@VERSION@.1">
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2 <description>Counts words of a specified size in a DNA sequence</description>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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3 <macros>
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4 <import>macros.xml</import>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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5 </macros>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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6 <expand macro="requirements" />
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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7 <command>wordcount -sequence '$input1' -outfile '$out_file1' -wordsize $wordsize -auto</command>
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8 <inputs>
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9 <param name="input1" type="data" format="fasta" label="Sequence" />
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10 <param name="wordsize" type="integer" value="4" label="Word size" />
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11 </inputs>
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12 <outputs>
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13 <data name="out_file1" format="wordcount" />
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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14 </outputs>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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15 <tests>
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16 <test>
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17 <param name="input1" value="2.fasta"/>
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18 <param name="wordsize" value="4"/>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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19 <output name="out_file1" file="emboss_wordcount_out.wordcount"/>
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20 </test>
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21 </tests>
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22 <help>
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23 .. class:: warningmark
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25 The input dataset needs to be sequences.
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27 -----
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29 You can view the original documentation here_.
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31 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/wordcount.html
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32 </help>
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33 <expand macro="citations" />
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34 </tool>