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annotate test-data/emboss_pepstats_out.pepstats @ 2:a52e6cbbb469

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Added tool_dependencies.xml
author greg <greg@bx.psu.edu>
date Tue, 03 Jul 2012 14:46:59 -0400
parents 7334f6d0ac17
children
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7334f6d0ac17 Uploaded emboss functional test input and output data files.
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1 PEPSTATS of Sequence from 1 to 561
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2
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3 Molecular weight = 48582.66 Residues = 561
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4 Average Residue Weight = 86.600 Charge = 0.0
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5 Isoelectric Point = 5.0278
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6 A280 Molar Extinction Coefficient = 0
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7 A280 Extinction Coefficient 1mg/ml = 0.00
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8 Improbability of expression in inclusion bodies = 0.520
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9
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10 Residue Number Mole% DayhoffStat
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11 A = Ala 135 24.064 2.798
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12 B = Asx 0 0.000 0.000
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13 C = Cys 106 18.895 6.515
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14 D = Asp 0 0.000 0.000
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15 E = Glu 0 0.000 0.000
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16 F = Phe 0 0.000 0.000
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17 G = Gly 98 17.469 2.080
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18 H = His 0 0.000 0.000
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19 I = Ile 0 0.000 0.000
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20 J = --- 0 0.000 0.000
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21 K = Lys 0 0.000 0.000
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22 L = Leu 0 0.000 0.000
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23 M = Met 0 0.000 0.000
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24 N = Asn 0 0.000 0.000
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25 O = --- 0 0.000 0.000
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26 P = Pro 0 0.000 0.000
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27 Q = Gln 0 0.000 0.000
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28 R = Arg 0 0.000 0.000
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29 S = Ser 0 0.000 0.000
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30 T = Thr 222 39.572 6.487
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31 U = --- 0 0.000 0.000
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32 V = Val 0 0.000 0.000
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33 W = Trp 0 0.000 0.000
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34 X = Xaa 0 0.000 0.000
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35 Y = Tyr 0 0.000 0.000
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36 Z = Glx 0 0.000 0.000
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37
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38 Property Residues Number Mole%
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39 Tiny (A+C+G+S+T) 561 100.000
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40 Small (A+B+C+D+G+N+P+S+T+V) 561 100.000
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41 Aliphatic (A+I+L+V) 135 24.064
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42 Aromatic (F+H+W+Y) 0 0.000
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43 Non-polar (A+C+F+G+I+L+M+P+V+W+Y) 339 60.428
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44 Polar (D+E+H+K+N+Q+R+S+T+Z) 222 39.572
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45 Charged (B+D+E+H+K+R+Z) 0 0.000
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46 Basic (H+K+R) 0 0.000
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47 Acidic (B+D+E+Z) 0 0.000
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