annotate emboss_tmap.xml @ 18:63dd26468588 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 18de4aa9ba00124b1b3e3afe14219e46931e58a9"
author iuc
date Fri, 09 Jul 2021 18:36:34 +0000
parents 8992d258e42f
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8992d258e42f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9844cae766e7471d9fa6b2e8356e5194e77f6753
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1 <tool id="EMBOSS: tmap99" name="tmap" version="@VERSION@">
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2 <description>Displays membrane spanning regions</description>
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3 <macros>
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4 <import>macros.xml</import>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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5 </macros>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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6 <expand macro="requirements" />
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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7 <code file="emboss_format_corrector.py" />
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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8 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' tmap -sequences '$input1' -outfile '$out_file1' -goutfile '$out_file2' -graph png -rformat $out_format1 -auto</command>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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9 <inputs>
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10 <param name="input1" type="data" format="data" label="Sequence" />
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11 <param name="out_format1" type="select" label="Output report file format">
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12 <option value="seqtable ">SeqTable</option>
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13 <option value="embl">EMBL</option>
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14 <option value="genbank">GENBANK</option>
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15 <option value="gff">GFF</option>
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16 <option value="pir">PIR</option>
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17 <option value="swiss">SwissProt</option>
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18 <option value="dbmotif">DbMotif</option>
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19 <option value="diffseq">Diffseq</option>
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20 <option value="excel">Excel (tab delimited)</option>
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21 <option value="feattable">FeatTable</option>
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22 <option value="motif">Motif</option>
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23 <option value="regions">Regions</option>
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24 <option value="simple">SRS Simple</option>
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25 <option value="srs">SRS</option>
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26 <option value="table">Table</option>
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27 <option value="tagseq">TagSeq</option>
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28 </param>
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29 </inputs>
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30 <outputs>
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31 <data name="out_file1" format="seqtable" />
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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32 <data name="out_file2" format="png" />
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33 </outputs>
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34 <help>
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35 You can view the original documentation here_.
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36
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37 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/tmap.html
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38 </help>
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39 <expand macro="citations" />
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40 </tool>