Mercurial > repos > devteam > emboss_5
comparison emboss_5/emboss_fuzztran.xml @ 8:b810c96613ee draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:12:41 -0500 |
| parents | b94ca591877b |
| children |
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| 7:ce22ceec214a | 8:b810c96613ee |
|---|---|
| 4 <command>fuzztran -sequence $input1 -outfile $out_file1 -pattern "$pattern" -pmismatch $mismatch -frame $frame -table $table -rformat2 $out_format1 -auto</command> | 4 <command>fuzztran -sequence $input1 -outfile $out_file1 -pattern "$pattern" -pmismatch $mismatch -frame $frame -table $table -rformat2 $out_format1 -auto</command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param format="fasta" name="input1" type="data"> | 6 <param format="fasta" name="input1" type="data"> |
| 7 <label>Sequences</label> | 7 <label>Sequences</label> |
| 8 </param> | 8 </param> |
| 9 <param name="pattern" size="5" type="text" value=""> | 9 <param name="pattern" type="text" value=""> |
| 10 <label>Search pattern</label> | 10 <label>Search pattern</label> |
| 11 </param> | 11 </param> |
| 12 <param name="mismatch" size="5" type="text" value="0"> | 12 <param name="mismatch" type="text" value="0"> |
| 13 <label>Number of mismatches</label> | 13 <label>Number of mismatches</label> |
| 14 </param> | 14 </param> |
| 15 <param name="frame" type="select"> | 15 <param name="frame" type="select"> |
| 16 <label>Frame(s) to translate</label> | 16 <label>Frame(s) to translate</label> |
| 17 <option value="1">Frame 1</option> | 17 <option value="1">Frame 1</option> |