Mercurial > repos > devteam > emboss_5
comparison emboss_5/emboss_maskfeat.xml @ 8:b810c96613ee draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:12:41 -0500 |
| parents | b94ca591877b |
| children |
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| 7:ce22ceec214a | 8:b810c96613ee |
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| 4 <command>maskfeat -sequence $input1 -outseq $out_file1 -type "$type" -tolower $tolower -maskchar "$maskchar" -osformat2 $out_format1 -auto</command> | 4 <command>maskfeat -sequence $input1 -outseq $out_file1 -type "$type" -tolower $tolower -maskchar "$maskchar" -osformat2 $out_format1 -auto</command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param format="data" name="input1" type="data"> | 6 <param format="data" name="input1" type="data"> |
| 7 <label>Sequence</label> | 7 <label>Sequence</label> |
| 8 </param> | 8 </param> |
| 9 <param name="type" size="50" type="text" value="repeat*"> | 9 <param name="type" type="text" value="repeat*"> |
| 10 <label>Feature to mask</label> | 10 <label>Feature to mask</label> |
| 11 </param> | 11 </param> |
| 12 <param name="tolower" type="select"> | 12 <param name="tolower" type="select"> |
| 13 <label>Mask features by converting to lowercase</label> | 13 <label>Mask features by converting to lowercase</label> |
| 14 <option value="no">No</option> | 14 <option value="no">No</option> |
| 15 <option value="yes">Yes</option> | 15 <option value="yes">Yes</option> |
| 16 </param> | 16 </param> |
| 17 <param name="maskchar" size="1" type="text" value="N"> | 17 <param name="maskchar" type="text" value="N"> |
| 18 <label>Character to mask with</label> | 18 <label>Character to mask with</label> |
| 19 </param> | 19 </param> |
| 20 <param name="out_format1" type="select"> | 20 <param name="out_format1" type="select"> |
| 21 <label>Output Sequence File Format</label> | 21 <label>Output Sequence File Format</label> |
| 22 <option value="fasta">FASTA (m)</option> | 22 <option value="fasta">FASTA (m)</option> |