Mercurial > repos > devteam > emboss_5
comparison emboss_5/emboss_trimseq.xml @ 8:b810c96613ee draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:12:41 -0500 |
| parents | b94ca591877b |
| children |
comparison
equal
deleted
inserted
replaced
| 7:ce22ceec214a | 8:b810c96613ee |
|---|---|
| 4 <command>trimseq -sequence $input1 -outseq $out_file1 -window "$window" -percent "$percent" -strict $strict -star $star -left $left -right $right -osformat2 $out_format1 -auto</command> | 4 <command>trimseq -sequence $input1 -outseq $out_file1 -window "$window" -percent "$percent" -strict $strict -star $star -left $left -right $right -osformat2 $out_format1 -auto</command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param format="fasta" name="input1" type="data"> | 6 <param format="fasta" name="input1" type="data"> |
| 7 <label>Sequences</label> | 7 <label>Sequences</label> |
| 8 </param> | 8 </param> |
| 9 <param name="window" size="4" type="text" value="1"> | 9 <param name="window" type="text" value="1"> |
| 10 <label>Window size</label> | 10 <label>Window size</label> |
| 11 </param> | 11 </param> |
| 12 <param name="percent" size="5" type="text" value="100.0"> | 12 <param name="percent" type="text" value="100.0"> |
| 13 <label>Threshold of the percentage ambiguity</label> | 13 <label>Threshold of the percentage ambiguity</label> |
| 14 </param> | 14 </param> |
| 15 <param name="strict" type="select"> | 15 <param name="strict" type="select"> |
| 16 <label>Trim all ambiguity codes</label> | 16 <label>Trim all ambiguity codes</label> |
| 17 <option value="no">No</option> | 17 <option value="no">No</option> |