Mercurial > repos > devteam > emboss_5
comparison emboss_freak.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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9:511429456d3c | 10:d49956b87f7e |
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1 <tool id="EMBOSS: freak36" name="freak" version="5.0.0.1"> | |
2 <description>Residue/base frequency table or plot</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command>freak -seqall '$input1' -outfile '$out_file1' -window $window -letters '$letters' -graph png -step $step -auto</command> | |
8 <inputs> | |
9 <param name="input1" type="data" format="data" label="Sequences" /> | |
10 <param name="letters" type="text" value="gc" label="Residue letters" /> | |
11 <param name="step" type="integer" value="1" label="Stepping value" /> | |
12 <param name="window" type="integer" value="30" label="Averaging window" /> | |
13 </inputs> | |
14 <outputs> | |
15 <data name="out_file1" format="freak" /> | |
16 </outputs> | |
17 <tests> | |
18 <test> | |
19 <param name="input1" value="2.fasta"/> | |
20 <param name="letters" value="gc"/> | |
21 <param name="step" value="1"/> | |
22 <param name="window" value="30"/> | |
23 <output name="out_file1" file="emboss_freak_out.freak"/> | |
24 </test> | |
25 </tests> | |
26 <help> | |
27 You can view the original documentation here_. | |
28 | |
29 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/freak.html | |
30 </help> | |
31 <expand macro="citations" /> | |
32 </tool> |