Mercurial > repos > devteam > emboss_5
comparison emboss_infoseq.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
---|---|
date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
comparison
equal
deleted
inserted
replaced
9:511429456d3c | 10:d49956b87f7e |
---|---|
1 <tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0"> | |
2 <!-- info contains file information always --> | |
3 <description>Displays some simple information about sequences</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements" /> | |
8 <code file="emboss_format_corrector.py" /> | |
9 <command>infoseq -sequence '$input1' -outfile '$out_file1' -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc | |
10 $pgc -description $description -auto</command> | |
11 <inputs> | |
12 <param name="input1" type="data" format="data" label="Sequences" /> | |
13 <param name="html_out1" type="select" label="Format output as an HTML table"> | |
14 <option value="no">No</option> | |
15 <option value="yes">Yes</option> | |
16 </param> | |
17 <param name="heading" type="select" label="Display column headings"> | |
18 <option value="yes">Yes</option> | |
19 <option value="no">No</option> | |
20 </param> | |
21 <param name="usa" type="select" label="Display the USA of the sequence"> | |
22 <option value="yes">Yes</option> | |
23 <option value="no">No</option> | |
24 </param> | |
25 <param name="disname" type="select" label="Display 'name' column"> | |
26 <option value="yes">Yes</option> | |
27 <option value="no">No</option> | |
28 </param> | |
29 <param name="accession" type="select" label="Display 'accession' column"> | |
30 <option value="yes">Yes</option> | |
31 <option value="no">No</option> | |
32 </param> | |
33 <param name="gi" type="select" label="Display 'GI' column"> | |
34 <option value="no">No</option> | |
35 <option value="yes">Yes</option> | |
36 </param> | |
37 <param name="version" type="select" label="Display 'version' column"> | |
38 <option value="no">No</option> | |
39 <option value="yes">Yes</option> | |
40 </param> | |
41 <param name="type" type="select" label="Display 'type' column"> | |
42 <option value="yes">Yes</option> | |
43 <option value="no">No</option> | |
44 </param> | |
45 <param name="length" type="select" label="Display 'length' column"> | |
46 <option value="yes">Yes</option> | |
47 <option value="no">No</option> | |
48 </param> | |
49 <param name="pgc" type="select" label="Display 'percent GC content' column"> | |
50 <option value="yes">Yes</option> | |
51 <option value="no">No</option> | |
52 </param> | |
53 <param name="description" type="select" label="Display 'description' column"> | |
54 <option value="yes">Yes</option> | |
55 <option value="no">No</option> | |
56 </param> | |
57 </inputs> | |
58 <outputs> | |
59 <data name="out_file1" format="txt" /> | |
60 </outputs> | |
61 <help> | |
62 You can view the original documentation here_. | |
63 | |
64 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/infoseq.html | |
65 </help> | |
66 <expand macro="citations" /> | |
67 </tool> |