Mercurial > repos > devteam > emboss_5
comparison emboss_newcpgreport.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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9:511429456d3c | 10:d49956b87f7e |
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1 <tool id="EMBOSS: newcpgreport57" name="newcpgreport" version="5.0.0.1"> | |
2 <description>Report CpG rich areas</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command>newcpgreport -sequence '$input1' -window $window -shift $shift -minlen $minlen -minpc $minpc -outfile '$out_file1' -minoe $minoe -auto</command> | |
8 <inputs> | |
9 <param name="input1" type="data" format="data" label="Sequence" /> | |
10 <param name="window" type="integer" value="100" label="Window size" /> | |
11 <param name="shift" type="integer" value="1" label="Step size (shift)" /> | |
12 <param name="minlen" type="integer" value="200" label="Minimum length" /> | |
13 <param name="minoe" type="float" value="0.6" label="Minimum average observed to expected ratio" /> | |
14 <param name="minpc" type="float" value="50.0" label="Minimum average percentage of G plus C" /> | |
15 </inputs> | |
16 <outputs> | |
17 <data name="out_file1" format="newcpgreport" /> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="input1" value="2.fasta"/> | |
22 <param name="window" value="100"/> | |
23 <param name="shift" value="1"/> | |
24 <param name="minlen" value="200"/> | |
25 <param name="minoe" value="0.6"/> | |
26 <param name="minpc" value="50.0"/> | |
27 <output name="out_file1" file="emboss_newcpgreport_out.newcpgreport"/> | |
28 </test> | |
29 </tests> | |
30 <help> | |
31 You can view the original documentation here_. | |
32 | |
33 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/newcpgreport.html | |
34 </help> | |
35 <expand macro="citations" /> | |
36 </tool> |