comparison emboss_newcpgreport.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children 8992d258e42f
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9:511429456d3c 10:d49956b87f7e
1 <tool id="EMBOSS: newcpgreport57" name="newcpgreport" version="5.0.0.1">
2 <description>Report CpG rich areas</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command>newcpgreport -sequence '$input1' -window $window -shift $shift -minlen $minlen -minpc $minpc -outfile '$out_file1' -minoe $minoe -auto</command>
8 <inputs>
9 <param name="input1" type="data" format="data" label="Sequence" />
10 <param name="window" type="integer" value="100" label="Window size" />
11 <param name="shift" type="integer" value="1" label="Step size (shift)" />
12 <param name="minlen" type="integer" value="200" label="Minimum length" />
13 <param name="minoe" type="float" value="0.6" label="Minimum average observed to expected ratio" />
14 <param name="minpc" type="float" value="50.0" label="Minimum average percentage of G plus C" />
15 </inputs>
16 <outputs>
17 <data name="out_file1" format="newcpgreport" />
18 </outputs>
19 <tests>
20 <test>
21 <param name="input1" value="2.fasta"/>
22 <param name="window" value="100"/>
23 <param name="shift" value="1"/>
24 <param name="minlen" value="200"/>
25 <param name="minoe" value="0.6"/>
26 <param name="minpc" value="50.0"/>
27 <output name="out_file1" file="emboss_newcpgreport_out.newcpgreport"/>
28 </test>
29 </tests>
30 <help>
31 You can view the original documentation here_.
32
33 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/newcpgreport.html
34 </help>
35 <expand macro="citations" />
36 </tool>