comparison emboss_newcpgseek.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children 8992d258e42f
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9:511429456d3c 10:d49956b87f7e
1 <tool id="EMBOSS: newcpgseek58" name="newcpgseek" version="5.0.0.1">
2 <description>Reports CpG rich region</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command>newcpgseek -sequence '$input1' -outfile '$out_file1' -score $score -auto</command>
8 <inputs>
9 <param name="input1" type="data" format="fasta" label="Sequence" />
10 <param name="score" type="integer" value="17" label="CpG score" />
11 </inputs>
12 <outputs>
13 <data name="out_file1" format="newcpgseek" />
14 </outputs>
15 <tests>
16 <test>
17 <param name="input1" value="2.fasta"/>
18 <param name="score" value="17"/>
19 <output name="out_file1" file="emboss_newcpgseek_out.newcpgseek"/>
20 </test>
21 </tests>
22 <help>
23 .. class:: warningmark
24
25 The input dataset needs to be sequences.
26
27 -----
28
29 You can view the original documentation here_.
30
31 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/newcpgseek.html
32 </help>
33 <expand macro="citations" />
34 </tool>