Mercurial > repos > devteam > emboss_5
comparison emboss_pepnet.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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9:511429456d3c | 10:d49956b87f7e |
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1 <tool id="EMBOSS: pepnet70" name="pepnet" version="5.0.0"> | |
2 <!-- graphical output file with path information --> | |
3 <description>Displays proteins as a helical net</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements" /> | |
8 <command>pepnet -sequence '$input1' -graph png -goutfile '$out_file1' -squares '$squares' -diamonds '$diamonds' -octags '$octags' -amphipathic $amphipathic -auto</command> | |
9 <inputs> | |
10 <param name="input1" type="data" format="data" label="Sequence" /> | |
11 <param name="squares" type="text" value="ILVM" label="Residues to mark with squares" /> | |
12 <param name="diamonds" type="text" value="DENQST" label="Residues to mark with diamonds" /> | |
13 <param name="octags" type="text" value="HKR" label="Residues to mark with octagons" /> | |
14 <param name="amphipathic" type="select" label="Amphipathic?" help="If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified"> | |
15 <option value="no">No</option> | |
16 <option value="yes">Yes</option> | |
17 </param> | |
18 </inputs> | |
19 <outputs> | |
20 <data name="out_file1" format="png" /> | |
21 </outputs> | |
22 <help> | |
23 You can view the original documentation here_. | |
24 | |
25 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepnet.html | |
26 </help> | |
27 <expand macro="citations" /> | |
28 </tool> |