Mercurial > repos > devteam > emboss_5
comparison emboss_polydot.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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9:511429456d3c | 10:d49956b87f7e |
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1 <tool id="EMBOSS: polydot77" name="polydot" version="5.0.0.1"> | |
2 <!-- produces png file, not added functional tests --> | |
3 <description>Displays all-against-all dotplots of a set of sequences</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements" /> | |
8 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' polydot -sequence '$input1' -graph png -goutfile '$output2' -outfeat '$output1' -wordsize $wordsize -boxit $boxit -dumpfeat yes -gap | |
9 $gap -auto</command> | |
10 <inputs> | |
11 <param name="input1" type="data" format="fasta" label="Sequence" /> | |
12 <param name="wordsize" type="integer" value="6" label="Word size" /> | |
13 <param name="boxit" type="select" label="Draw a box around each dotplot"> | |
14 <option value="yes">Yes</option> | |
15 <option value="no">No</option> | |
16 </param> | |
17 <param name="gap" type="integer" value="10" label="Size of gap" /> | |
18 </inputs> | |
19 <outputs> | |
20 <data name="output1" format="polydot" /> | |
21 <data name="output2" format="png" /> | |
22 </outputs> | |
23 <!-- <tests> | |
24 <test> | |
25 <param name="input1" value="2.fasta"/> | |
26 <param name="wordsize" value="6"/> | |
27 <param name="boxit" value="yes"/> | |
28 <param name="gap" value="10"/> | |
29 <output name="output1" file="emboss_polydot_out.png"/> | |
30 </test> | |
31 </tests>--> | |
32 <help> | |
33 .. class:: warningmark | |
34 | |
35 The input dataset needs to be sequences. | |
36 | |
37 ----- | |
38 | |
39 You can view the original documentation here_. | |
40 | |
41 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/polydot.html | |
42 </help> | |
43 <expand macro="citations" /> | |
44 </tool> |